Identification of a set of SNPs markers for parentage analysis of the mediterranean red coral (Corallium rubrum)
Language
en
Article de revue
This item was published in
Conservation Genetics Resources. 2025-07-02
Springer
English Abstract
A set of single nucleotide polymorphism (SNPs) markers was developed from the transcriptome of ten individuals of the Mediterranean red coral (Corallium rubrum). Seven hundred sixty-five putative SNPs, suitable as genetic ...Read more >
A set of single nucleotide polymorphism (SNPs) markers was developed from the transcriptome of ten individuals of the Mediterranean red coral (Corallium rubrum). Seven hundred sixty-five putative SNPs, suitable as genetic markers, were identified, and a subset of 320 SNPs was tested using a MassARRAY System on 71 samples. A total of 179 SNPs were successfully genotyped, and 123 of them were polymorphic, with unambiguous signals, and in Hardy-Weinberg equilibrium, showing a significant Linkage Disequilibrium in 20 pairs of SNPs. The newly developed markers will be a useful tool for population genetics and parentage studies of this valuable octocoral.Read less <
English Keywords
Single nucleotide polymorphism
Genotyping
MassARRAY
RNA-seq
Cnidarian
Corallium rubrum
Origin
Hal imported