Identification of a set of SNPs markers for parentage analysis of the mediterranean red coral (Corallium rubrum)
| hal.structure.identifier | Laboratoire d'Ecogéochimie des environnements benthiques [LECOB] | |
| dc.contributor.author | GIORDANO, Bruna | |
| hal.structure.identifier | Biologie intégrative des organismes marins [BIOM] | |
| dc.contributor.author | DARIC, Vladimir | |
| hal.structure.identifier | Laboratoire d'Ecogéochimie des environnements benthiques [LECOB] | |
| dc.contributor.author | BRAMANTI, Lorenzo | |
| dc.contributor.author | DELCAMP, Adline | |
| hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
| dc.contributor.author | GUICHOUX, Erwan | |
| dc.contributor.author | CANNAS, Rita | |
| hal.structure.identifier | Laboratoire d'Ecogéochimie des environnements benthiques [LECOB] | |
| dc.contributor.author | GUIZIEN, Katell | |
| dc.date.accessioned | 2025-07-16T02:01:29Z | |
| dc.date.available | 2025-07-16T02:01:29Z | |
| dc.date.issued | 2025-07-02 | |
| dc.identifier.issn | 1877-7252 | |
| dc.identifier.uri | https://oskar-bordeaux.fr/handle/20.500.12278/207333 | |
| dc.description.abstractEn | A set of single nucleotide polymorphism (SNPs) markers was developed from the transcriptome of ten individuals of the Mediterranean red coral (Corallium rubrum). Seven hundred sixty-five putative SNPs, suitable as genetic markers, were identified, and a subset of 320 SNPs was tested using a MassARRAY System on 71 samples. A total of 179 SNPs were successfully genotyped, and 123 of them were polymorphic, with unambiguous signals, and in Hardy-Weinberg equilibrium, showing a significant Linkage Disequilibrium in 20 pairs of SNPs. The newly developed markers will be a useful tool for population genetics and parentage studies of this valuable octocoral. | |
| dc.language.iso | en | |
| dc.publisher | Springer | |
| dc.rights.uri | http://hal.archives-ouvertes.fr/licences/copyright/ | |
| dc.subject.en | Single nucleotide polymorphism | |
| dc.subject.en | Genotyping | |
| dc.subject.en | MassARRAY | |
| dc.subject.en | RNA-seq | |
| dc.subject.en | Cnidarian | |
| dc.subject.en | Corallium rubrum | |
| dc.title.en | Identification of a set of SNPs markers for parentage analysis of the mediterranean red coral (Corallium rubrum) | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1007/s12686-025-01395-5 | |
| dc.subject.hal | Sciences de l'environnement/Biodiversité et Ecologie | |
| bordeaux.journal | Conservation Genetics Resources | |
| bordeaux.hal.laboratories | BioGeCo (Biodiversité Gènes & Communautés) - UMR 1202 | * |
| bordeaux.institution | Université de Bordeaux | |
| bordeaux.institution | INRAE | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-05163208 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-05163208v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2025-07-02&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=GIORDANO,%20Bruna&DARIC,%20Vladimir&BRAMANTI,%20Lorenzo&DELCAMP,%20Adline&GUICHOUX,%20Erwan&rft.genre=article |
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