ZHUKOVA, Anna; SHERMAN, David James

Métadonnées

Licence d’utilisation du document

ZHUKOVA, Anna
Models and Algorithms for the Genome [ MAGNOME]
Laboratoire Bordelais de Recherche en Informatique [LaBRI]

SHERMAN, David James
Models and Algorithms for the Genome [ MAGNOME]

Langue

Autre communication scientifique (congrès sans actes - poster - séminaire...)

Ce document a été publié dans

Journées EDMI, 2014-11-04, Bordeaux.

Résumé en anglais

The complexity of genome-scale metabolic models makes them quite difficult for human users to read, since they contain thousands of reactions that must be included for accurate computer simulation. The web-based navigation system Mimoza allows a human expert to explore metabolic network models in a semantically zoomable manner: The most general view represents the compartments of the model; the next view shows the generalized versions of reactions and metabolites in each compartment; and the most detailed view represents the initial network with the generalization-based layout (where similar metabolites and reactions are placed next to each other). It allows a human expert to grasp the general structure of the network and analyze it in a top-down manner.< Réduire

Mots clés en anglais

Metabolic modeling

model generalization

visualization

Métadonnées

Partager cette publication !

Licence d’utilisation du document

Three-level representation of metabolic networks

Langue

Ce document a été publié dans

Résumé en anglais

Mots clés en anglais

URI

Origine

Unités de recherche