CLAISSE, Olivier; CHAIB, Amel; JAOMANJAKA, Fety; PHILIPPE, Cecile; BARCHI, Yasma; LUCAS, Patrick M.; LE MARREC, Claire

doi:10.3390/microorganisms9040856

Unité de Recherche Oenologie [Villenave d'Ornon] [OENO]

CHAIB, Amel

Unité de Recherche Oenologie [Villenave d'Ornon] [OENO]

JAOMANJAKA, Fety
Unité de Recherche Oenologie [Villenave d'Ornon] [OENO]

Langue

Article de revue

Ce document a été publié dans

Microorganisms. 2021, vol. 9, n° 4

Résumé en anglais

Oenococcus oeni is the most exploited lactic acid bacterium in the wine industry and drives the malolactic fermentation of wines. Although prophage-like sequences have been identified in the species, many are not characterized, and a global view of their integration and distribution amongst strains is currently lacking. In this work, we analyzed the complete genomes of 231 strains for the occurrence of prophages, and analyzed their size and positions of insertion. Our data show the limited variation in the number of prophages in O. oeni genomes, and that six sites of insertion within the bacterial genome are being used for site-specific recombination. Prophage diversity patterns varied significantly for different host lineages, and environmental niches. Overall, the findings highlight the pervasive presence of prophages in the O. oeni species, their role as a major source of within-species bacterial diversity and drivers of horizontal gene transfer. Our data also have implications for enhanced understanding of the prophage recombination events which occurred during evolution of O. oeni, as well as the potential of prophages in influencing the fitness of these bacteria in their distinct niches.< Réduire

Mots clés en anglais

Bacteriophage

Oenococcus oeni

Malolactic fermentation

Integrase

Recombination

URI

https://oskar-bordeaux.fr/handle/20.500.12278/124219

DOI

http://dx.doi.org/10.3390/microorganisms9040856

Lien vers les données de la recherche

https://www.mdpi.com/article/10.3390/microorganisms9040856/s1

Project ANR

Evolution expérimentale en mileu extrême de la bactérie lactique Oenococcus oeni et applications à la sélection de levains malo-lactiques plus performants - ANR-20-CE20-0008

Unités de recherche

Oenologie - UMR 1366

Voir/Ouvrir

Métadonnées

Partager cette publication !

Licence d’utilisation du document

Distribution of prophages in the oenococcus oeni species