A computational architecture designed for genome annotation: oak genome sequencing project as a use case
ALAEITABAR, Tina
Etude du Polymorphisme des Génomes Végétaux [EPGV]
Unité de Recherche Génomique Info [URGI]
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Etude du Polymorphisme des Génomes Végétaux [EPGV]
Unité de Recherche Génomique Info [URGI]
ALAEITABAR, Tina
Etude du Polymorphisme des Génomes Végétaux [EPGV]
Unité de Recherche Génomique Info [URGI]
< Reduce
Etude du Polymorphisme des Génomes Végétaux [EPGV]
Unité de Recherche Génomique Info [URGI]
Language
en
Autre communication scientifique (congrès sans actes - poster - séminaire...)
This item was published in
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, 2015-07-06, Clermont-ferrand. 2015p. np
English Abstract
The ANR Genoak project aims to study the two key evolutionary processes that explain the remarkable diversity found within the oak genus. We performed anautomated structural annotation (transposable elements (TEs) and ...Read more >
The ANR Genoak project aims to study the two key evolutionary processes that explain the remarkable diversity found within the oak genus. We performed anautomated structural annotation (transposable elements (TEs) and genes) and functional annotation of predicted genes using robust pipelines i/ REPET for TEs ii/Eugene for gene prediction iii/ FunAnnotPipe (in-house pipeline) mainly based on InterproScan for functional annotation. Further objectives were to: i/ integrate thewhole genome with all the features annotated into a Genome Browser, ii/ provide an interface for gene prediction curation/validation, and iii/ provide an informationsystem pointing towards accessibility and interoperability.Read less <
English Keywords
Functional annotation
Structural annotation
Origin
Hal imported