FRANCILLONNE, Nicolas; ALAEITABAR, Tina; ALFAMA-DEPAUW, Françoise; COUDERC, Loïc; GUERCHE, Claire; LETELLIER, Thomas; LOAEC, Mikaël; LUYTEN, Isabelle; MICHOTEY, Célia; AURY, Jean-Marc; QUESNEVILLE, Hadi; PLOMION, Christophe; AMSELEM, Joelle

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FRANCILLONNE, Nicolas
Unité de Recherche Génomique Info [URGI]

ALAEITABAR, Tina
Etude du Polymorphisme des Génomes Végétaux [EPGV]
Unité de Recherche Génomique Info [URGI]

ALFAMA-DEPAUW, Françoise
Unité de Recherche Génomique Info [URGI]

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Autre communication scientifique (congrès sans actes - poster - séminaire...)

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JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, 2015-07-06, Clermont-ferrand. 2015p. np

Resumen en inglés

The ANR Genoak project aims to study the two key evolutionary processes that explain the remarkable diversity found within the oak genus. We performed anautomated structural annotation (transposable elements (TEs) and genes) and functional annotation of predicted genes using robust pipelines i/ REPET for TEs ii/Eugene for gene prediction iii/ FunAnnotPipe (in-house pipeline) mainly based on InterproScan for functional annotation. Further objectives were to: i/ integrate thewhole genome with all the features annotated into a Genome Browser, ii/ provide an interface for gene prediction curation/validation, and iii/ provide an informationsystem pointing towards accessibility and interoperability.< Leer menos

Palabras clave en inglés

Functional annotation

Structural annotation

Orígen

Importado de Hal

Centros de investigación

BioGeCo (Biodiversité Gènes & Communautés) - UMR 1202