The Image Data Explorer: Interactive exploration of image-derived data
MULLER, Coralie
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
European Molecular Biology Laboratory [Heidelberg] [EMBL]
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Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
European Molecular Biology Laboratory [Heidelberg] [EMBL]
MULLER, Coralie
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
European Molecular Biology Laboratory [Heidelberg] [EMBL]
< Reduce
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
European Molecular Biology Laboratory [Heidelberg] [EMBL]
Language
en
Article de revue
This item was published in
PLoS ONE. 2022-09-15, vol. 17, n° 9, p. e0273698
Public Library of Science
English Abstract
Many bioimage analysis projects produce quantitative descriptors of regions of interest in images. Associating these descriptors with visual characteristics of the objects they describe is a key step in understanding the ...Read more >
Many bioimage analysis projects produce quantitative descriptors of regions of interest in images. Associating these descriptors with visual characteristics of the objects they describe is a key step in understanding the data at hand. However, as many bioimage data and their analysis workflows are moving to the cloud, addressing interactive data exploration in remote environments has become a pressing issue. To address it, we developed the Image Data Explorer (IDE) as a web application that integrates interactive linked visualization of images and derived data points with exploratory data analysis methods, annotation, classification and feature selection functionalities. The IDE is written in R using the shiny framework. It can be easily deployed on a remote server or on a local computer. The IDE is available at https://git.embl.de/heriche/image-data-explorer and a cloud deployment is accessible at https://shiny-portal.embl.de/shinyapps/app/01_image-data-explorer .Read less <
Origin
Hal imported