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The functional microbiome of grapevine throughout plant evolutionary history and lifetime
FOURNIER, Paola
Santé et agroécologie du vignoble [UMR SAVE]
Biodiversité, Gènes & Communautés [BioGeCo]
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Santé et agroécologie du vignoble [UMR SAVE]
Biodiversité, Gènes & Communautés [BioGeCo]
FOURNIER, Paola
Santé et agroécologie du vignoble [UMR SAVE]
Biodiversité, Gènes & Communautés [BioGeCo]
< Leer menos
Santé et agroécologie du vignoble [UMR SAVE]
Biodiversité, Gènes & Communautés [BioGeCo]
Idioma
EN
Chapitre d'ouvrage
Este ítem está publicado en
Functional Microbiomes. 2022p. 27-99
Resumen en inglés
European grapevine is a complex holobiont composed of two plant genomes, that of the scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes that collectively form the microbiome. The ...Leer más >
European grapevine is a complex holobiont composed of two plant genomes, that of the scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes that collectively form the microbiome. The grapevine microbiome has been extensively described over the last decade, primarily using metabarcoding approaches. Unfortunately, metabarcoding data alone provide little information on microbial functions and outcomes of plant-microbe interactions. Here we review knowledge about the microorganisms that have a demonstrated influence, positive or negative, on the performance of the grapevine holobiont. Our review encompasses bacteria, filamentous fungi, yeasts, oomycetes and viruses. It covers aboveground and belowground microorganisms, including arbuscular mycorrhizal and ectomycorrhizal fungi. We focus on taxa and functions that protect the plant against pathogens and pests, promote growth, increase tolerance to abiotic stresses and highlight those involved in disease and decline. As the outcomes of plant-microbe interactions are labile, we examine the dynamics and functions of grapevine-microbiome interactions over both the plant lifetime and the plant evolutionary history, beginning with plant domestication. Based on the knowledge and gaps we identify, we suggest field sampling designs, culture-based experiments, molecular tools and theoretical analysis methods, including shotgun metagenomics and network models, that could be used in future research to uncover and leverage the full functional potential of the grapevine microbiome.< Leer menos
Palabras clave en inglés
Plant-microbe interaction
Biogeography
Coevolution
Vitis
Bacteria Fungi
Oomycete
Virus
Metagenomics
Microbial network
Centros de investigación