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The functional microbiome of grapevine throughout plant evolutionary history and lifetime

dc.rights.licenseopenen_US
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorFOURNIER, Paola
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
dc.contributor.authorPELLAN, Lucile
dc.contributor.authorBARROSO-BERGADÀ, Didac
dc.contributor.authorBOHAN, David A.
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, Thierry
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
dc.contributor.authorDELMOTTE, François
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
dc.contributor.authorDUFOUR, Marie-Cécile
hal.structure.identifierEcophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV]
dc.contributor.authorLAUVERGEAT, Virginie
IDREF: 105631000
hal.structure.identifierUnité de Recherche Œnologie [Villenave d'Ornon] [OENO]
dc.contributor.authorLE MARREC, Claire
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMARAIS, Armelle
hal.structure.identifierUnité de Recherche Œnologie [Villenave d'Ornon] [OENO]
dc.contributor.authorMARTINS, Guilherme
hal.structure.identifierUnité de Recherche Œnologie [Villenave d'Ornon] [OENO]
dc.contributor.authorMASNEUF POMAREDE, Isabelle
ORCID: 0000-0002-8806-8944
IDREF: 13239667X
dc.contributor.authorREY, Patrice
dc.contributor.authorSHERMAN, David
dc.contributor.authorTHIS, Patrice
dc.contributor.authorFRIOUX, Clémence
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLABARTHE, Simon
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorVACHER, Corinne
dc.contributor.editorBOHAN, David A.
dc.contributor.editorDUMBRELL, Alex
dc.date.accessioned2023-01-26T11:26:05Z
dc.date.available2023-01-26T11:26:05Z
dc.date.issued2022
dc.identifier.isbn978-0-323-98593-2en_US
dc.identifier.urihttps://oskar-bordeaux.fr/handle/20.500.12278/171805
dc.description.abstractEnEuropean grapevine is a complex holobiont composed of two plant genomes, that of the scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes that collectively form the microbiome. The grapevine microbiome has been extensively described over the last decade, primarily using metabarcoding approaches. Unfortunately, metabarcoding data alone provide little information on microbial functions and outcomes of plant-microbe interactions. Here we review knowledge about the microorganisms that have a demonstrated influence, positive or negative, on the performance of the grapevine holobiont. Our review encompasses bacteria, filamentous fungi, yeasts, oomycetes and viruses. It covers aboveground and belowground microorganisms, including arbuscular mycorrhizal and ectomycorrhizal fungi. We focus on taxa and functions that protect the plant against pathogens and pests, promote growth, increase tolerance to abiotic stresses and highlight those involved in disease and decline. As the outcomes of plant-microbe interactions are labile, we examine the dynamics and functions of grapevine-microbiome interactions over both the plant lifetime and the plant evolutionary history, beginning with plant domestication. Based on the knowledge and gaps we identify, we suggest field sampling designs, culture-based experiments, molecular tools and theoretical analysis methods, including shotgun metagenomics and network models, that could be used in future research to uncover and leverage the full functional potential of the grapevine microbiome.
dc.language.isoENen_US
dc.source.titleFunctional Microbiomesen_US
dc.subject.enPlant-microbe interaction
dc.subject.enBiogeography
dc.subject.enCoevolution
dc.subject.enVitis
dc.subject.enBacteria Fungi
dc.subject.enOomycete
dc.subject.enVirus
dc.subject.enMetagenomics
dc.subject.enMicrobial network
dc.title.enThe functional microbiome of grapevine throughout plant evolutionary history and lifetime
dc.typeChapitre d'ouvrageen_US
dc.identifier.doi10.1016/bs.aecr.2022.09.001en_US
dc.subject.halSciences du Vivant [q-bio]/Biologie végétaleen_US
bordeaux.page27-99en_US
bordeaux.hal.laboratoriesEcophysiologie et Génomique Fonctionnelle de la Vigne (EGFV) - UMR 1287en_US
bordeaux.institutionUniversité de Bordeauxen_US
bordeaux.institutionBordeaux Sciences Agroen_US
bordeaux.institutionINRAEen_US
bordeaux.inpressnonen_US
hal.exportfalse
dc.rights.ccPas de Licence CCen_US
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.btitle=Functional%20Microbiomes&rft.date=2022&rft.spage=27-99&rft.epage=27-99&rft.au=FOURNIER,%20Paola&PELLAN,%20Lucile&BARROSO-BERGAD%C3%80,%20Didac&BOHAN,%20David%20A.&CANDRESSE,%20Thierry&rft.isbn=978-0-323-98593-2&rft.genre=unknown


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