Pipeline to detect the positional and directional relationship between transposable elements and adjacent genes in host genome
Langue
en
Article de revue
Ce document a été publié dans
Peer Community Journal. 2021, vol. 1, p. e48
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Résumé en anglais
Understanding the relationship between transposable elements (TEs) and their closest positional genes in the host genome is a key point to explore their potential role in genome evolution. Transposable elements can regulate ...Lire la suite >
Understanding the relationship between transposable elements (TEs) and their closest positional genes in the host genome is a key point to explore their potential role in genome evolution. Transposable elements can regulate and affect gene expression not only because of their mobility within the genome but also because of their transcriptional activity. A comprehensive knowledge of structural organization between transposable elements and neighboring genes is important to study TE functional role in gene regulation. We implemented a pipeline which is capable to reveal the positional and directional relationship between TEs and adjacent gene distribution in the host genome.< Réduire
Mots clés en anglais
Transposable element
Gene
Genome
Bioinformatics
Pipeline
Origine
Importé de halUnités de recherche