MEYER-SAND, Barbara R. V.; BLANC-JOLIVET, Celine; MADER, Malte; PAREDES-VILLANUEVA, Kathelyn; TYSKLIND, Niklas; ALEXANDRE, M. Sebben; GUICHOUX, Erwan; DEGEN, Bernd

doi:10.1007/s12686-017-0928-5

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MEYER-SAND, Barbara R. V.
Departamento de Fitotecnia, Recnologia de Alimentos e Socio Economia

BLANC-JOLIVET, Celine

MADER, Malte

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Article de revue

Ce document a été publié dans

Conservation Genetics Resources. 2018, vol. 10, n° 4, p. 779-781

Springer

Résumé en anglais

A combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a MassARRAY® iPLEX™ platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studies< Réduire

Mots clés en anglais

Handroanthus sp.

single nucleotide polymorphism

MassARRAY

DOI

http://dx.doi.org/10.1007/s12686-017-0928-5

Project ANR

Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016
CEnter of the study of Biodiversity in Amazonia

Origine

Importé de hal

Unités de recherche

BioGeCo (Biodiversité Gènes & Communautés) - UMR 1202