Development of set of SNP markers for population genetics studies of lpe (Handroanthus sp.), a valuable tree genus from Latin America
Language
en
Article de revue
This item was published in
Conservation Genetics Resources. 2018, vol. 10, n° 4, p. 779-781
Springer
English Abstract
A combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers ...Read more >
A combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a MassARRAY® iPLEX™ platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studiesRead less <
English Keywords
Handroanthus sp.
single nucleotide polymorphism
MassARRAY
ANR Project
Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016
CEnter of the study of Biodiversity in Amazonia
CEnter of the study of Biodiversity in Amazonia
Origin
Hal imported