CHAVENT, Marie; GENUER, Robin; KUENTZ-SIMONET, Vanessa; LIQUET, Benoit; SARACCO, Jerôme

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CHAVENT, Marie
Quality control and dynamic reliability [CQFD]

GENUER, Robin
Equipe de Biostatistique

KUENTZ-SIMONET, Vanessa
Aménités et dynamiques des espaces ruraux [UR ADBX]

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Communication dans un congrès

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Statistical Methods for (post)-Genomics Data (SMPGD 2013), 2013-01-24.

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The main goal of this work is to tackle the problem of dimension reduction for high-dimensional supervised classication. The motivation is to handle gene expression data. The proposed method works in 2 steps. First, one eliminates redundancy using clustering of variables, based on the R-package ClustOfVar. This first step is only based on the exploratory variables (genes). Second, the synthetic variables (summarizing the clusters obtained at the first step) are used to construct a classifier (e.g. logistic regression, LDA, random forests). We stress that the first step reduces the dimension and gives linear combinations of original variables (synthetic variables). This step can be considered as an alternative to PCA. A selection of predictors (synthetic variables) in the second step gives a set of relevant original variables (genes). Numerical performances of the proposed procedure are evaluated on gene expression datasets. We compare our methodology with LASSO and sparse PLS discriminant analysis on these datasets.< Leer menos

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ClustOfVar : an R package for dimension reduction via clustering of variables. Application in supervised classification and variable selection in gene expressions data

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