The functional microbiome of grapevine throughout plant evolutionary history and lifetime
REY, Patrice
Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux [IPREM]
Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux [IPREM]
SHERMAN, David James
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
THIS, Patrice
Amélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP]
Amélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP]
FRIOUX, Clémence
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
LABARTHE, Simon
Biodiversité, Gènes & Communautés [BioGeCo]
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
< Réduire
Biodiversité, Gènes & Communautés [BioGeCo]
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
Langue
en
Article de revue
Ce document a été publié dans
Advances in Ecological Research. 2022, vol. 67, p. 27-99
Elsevier
Résumé en anglais
European grapevine is a complex holobiont composed of two plant genomes, that of the scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes that collectively form the microbiome. The ...Lire la suite >
European grapevine is a complex holobiont composed of two plant genomes, that of the scion (Vitis vinifera L.) and the rootstock (Vitis spp.), and a multitude of microbial genomes that collectively form the microbiome. The grapevine microbiome has been extensively described over the last decade, primarily using metabarcoding approaches. Unfortunately, metabarcoding data alone provide little information on microbial functions and outcomes of plant-microbe interactions. Here we review knowledge about the microorganisms that have a demonstrated influence, positive or negative, on the performance of the grapevine holobiont. Our review encompasses bacteria, filamentous fungi, yeasts, oomycetes and viruses. It covers aboveground and belowground microorganisms, including arbuscular mycorrhizal and ectomycorrhizal fungi. We focus on taxa and functions that protect the plant against pathogens and pests, promote growth, increase tolerance to abiotic stresses and highlight those involved in disease and decline. As the outcomes of plant-microbe interactions are labile, we examine the dynamics and functions of grapevine-microbiome interactions over both the plant lifetime and the plant evolutionary history, beginning with plant domestication. Based on the knowledge and gaps we identify, we suggest field sampling designs, culture-based experiments, molecular tools and theoretical analysis methods, including shotgun metagenomics and network models, that could be used in future research to uncover and leverage the full functional potential of the grapevine microbiome.< Réduire
Mots clés en anglais
Plant-microbe interaction
Biogeography
Coevolution
Vitis
Bacteria
Fungi
Oomycete
Virus
Metagenomics
Microbial network
Project ANR
Cultivating the grapevine without pesticides : towards agroecological wine-producing socio-ecosystems - ANR-20-PCPA-0010
Biosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes
Biosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes
Origine
Importé de hal