COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

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SALEK, Reza
Department of Biochemistry
European Bioinformatics Institute [Hinxton] [EMBL-EBI]

NEUMANN, Steffen
Department of Stress and Developmental Biology

SCHOBER, Daniel
Department of Stress and Developmental Biology

SALEK, Reza
Department of Biochemistry
European Bioinformatics Institute [Hinxton] [EMBL-EBI]

NEUMANN, Steffen
Department of Stress and Developmental Biology

SCHOBER, Daniel
Department of Stress and Developmental Biology

HUMMEL, Jan
Max Planck Institute of Molecular Plant Physiology [MPI-MP]

BILLIAU, Kenny
Max Planck Institute of Molecular Plant Physiology [MPI-MP]

KOPKA, Joachim
Max Planck Institute of Molecular Plant Physiology [MPI-MP]

CORREA, Elon
University of Manchester [Manchester]

REIJMERS, Theo
Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University

ROSATO, Antonio
Magnetic Resonance Center

TENORI, Leonardo
Magnetic Resonance Center

TURANO, Paola
Magnetic Resonance Center

MARIN, Silvia
Department of Biochemistry and Molecular Biology

DEBORDE, Catherine
Biologie du fruit et pathologie [BFP]

JACOB, Daniel
Biologie du fruit et pathologie [BFP]

ROLIN, Dominique
Biologie du fruit et pathologie [BFP]

DARTIGUES, Benjamin
Centre de Bioinformatique de Bordeaux [CBIB]

CONESA, Pablo
European Bioinformatics Institute [Hinxton] [EMBL-EBI]

HAUG, Kenneth
European Bioinformatics Institute [Hinxton] [EMBL-EBI]

ROCCA-SERRA, Philippe
Oxford e-Research Centre [Oxford]

O’HAGAN, Steve
University of Manchester [Manchester]

HAO, Jie
Imperial College London

VLIET, Michael Van
Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University

SYSI-AHO, Marko
Zora Biosciences

LUDWIG, Christian
University of Birmingham [Birmingham]

BOUWMAN, Jildau
Microbiology & Systems Biology, TNO

CASCANTE, Marta
Departament de Bioquímica i Biologia Molecular

EBBELS, Timothy
Imperial College London

GRIFFIN, Julian L.
Medical Research Council Human Nutrition Research

MOING, Annick
Biologie du fruit et pathologie [BFP]

NIKOLSKI, Macha
Laboratoire Bordelais de Recherche en Informatique [LaBRI]
Centre de Bioinformatique de Bordeaux [CBIB]

ORESIC, Matej
Zora Biosciences

SANSONE, Susanna-Assunta
Oxford e-Research Centre [Oxford]

VIANT, Mark R.
School of Biosciences

GOODACRE, Royston
University of Manchester [Manchester]

GÜNTHER, Ulrich L.
School of Cancer Sciences

HANKEMEIER, Thomas
Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University

LUCHINAT, Claudio
Magnetic Resonance Center

WALTHER, Dirk
Max Planck Institute of Molecular Plant Physiology [MPI-MP]

STEINBECK, Christoph
European Bioinformatics Institute [Hinxton] [EMBL-EBI]

Langue

en

Article de revue

Ce document a été publié dans

Metabolomics. 2015-05-26, vol. 11, n° 6, p. Journal no. 11306

Springer Verlag

Résumé en anglais

Metabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental ...Lire la suite >

Metabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental information between research groups, as well as potentially to publishers and funders. After the initial efforts of the metabolomics standards initiative, minimum reporting standards were proposed which included the concepts for metabolomics databases. Built by the community, standards and infrastructure for metabolomics are still needed to allow storage, exchange, comparison and re-utilization of metabolomics data. The Framework Programme 7 EU Initiative ‘coordination of standards in metabolomics’ (COSMOS) is developing a robust data infrastructure and exchange standards for metabolomics data and metadata. This is to support workflows for a broad range of metabolomics applications within the European metabolomics community and the wider metabolomics and biomedical communities’ participation. Here we announce our concepts and efforts asking for re-engagement of the metabolomics community, academics and industry, journal publishers, software and hardware vendors, as well as those interested in standardisation worldwide (addressing missing metabolomics ontologies, complex-metadata capturing and XML based open source data exchange format), to join and work towards updating and implementing metabolomics standards.< Réduire

Mots clés en anglais

Metabolomics

Metabonomics

Data standards

Data exchange

e-Infrastructure

Coordination and data sharing community

DOI

http://dx.doi.org/10.1007/s11306-015-0810-y

Projet Européen

Developing an efficient e-infrastructure, standards and data-flow for metabolomics and its interface to biomedical and life science e-infrastructures in Europe and world-wide

Origine

Importé de hal

Unités de recherche

Biologie du Fruit & Pathologie (BFP) - UMR 1332

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