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COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

hal.structure.identifierDepartment of Biochemistry
hal.structure.identifierEuropean Bioinformatics Institute [Hinxton] [EMBL-EBI]
dc.contributor.authorSALEK, Reza
hal.structure.identifierDepartment of Stress and Developmental Biology
dc.contributor.authorNEUMANN, Steffen
hal.structure.identifierDepartment of Stress and Developmental Biology
dc.contributor.authorSCHOBER, Daniel
hal.structure.identifierMax Planck Institute of Molecular Plant Physiology [MPI-MP]
dc.contributor.authorHUMMEL, Jan
hal.structure.identifierMax Planck Institute of Molecular Plant Physiology [MPI-MP]
dc.contributor.authorBILLIAU, Kenny
hal.structure.identifierMax Planck Institute of Molecular Plant Physiology [MPI-MP]
dc.contributor.authorKOPKA, Joachim
hal.structure.identifierUniversity of Manchester [Manchester]
dc.contributor.authorCORREA, Elon
hal.structure.identifierDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University
dc.contributor.authorREIJMERS, Theo
hal.structure.identifierMagnetic Resonance Center
dc.contributor.authorROSATO, Antonio
hal.structure.identifierMagnetic Resonance Center
dc.contributor.authorTENORI, Leonardo
hal.structure.identifierMagnetic Resonance Center
dc.contributor.authorTURANO, Paola
hal.structure.identifierDepartment of Biochemistry and Molecular Biology
dc.contributor.authorMARIN, Silvia
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorDEBORDE, Catherine
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorJACOB, Daniel
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorROLIN, Dominique
hal.structure.identifierCentre de Bioinformatique de Bordeaux [CBIB]
dc.contributor.authorDARTIGUES, Benjamin
hal.structure.identifierEuropean Bioinformatics Institute [Hinxton] [EMBL-EBI]
dc.contributor.authorCONESA, Pablo
hal.structure.identifierEuropean Bioinformatics Institute [Hinxton] [EMBL-EBI]
dc.contributor.authorHAUG, Kenneth
hal.structure.identifierOxford e-Research Centre [Oxford]
dc.contributor.authorROCCA-SERRA, Philippe
hal.structure.identifierUniversity of Manchester [Manchester]
dc.contributor.authorO’HAGAN, Steve
hal.structure.identifierImperial College London
dc.contributor.authorHAO, Jie
hal.structure.identifierDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University
dc.contributor.authorVLIET, Michael Van
hal.structure.identifierZora Biosciences
dc.contributor.authorSYSI-AHO, Marko
hal.structure.identifierUniversity of Birmingham [Birmingham]
dc.contributor.authorLUDWIG, Christian
hal.structure.identifierMicrobiology & Systems Biology, TNO
dc.contributor.authorBOUWMAN, Jildau
hal.structure.identifierDepartament de Bioquímica i Biologia Molecular
dc.contributor.authorCASCANTE, Marta
hal.structure.identifierImperial College London
dc.contributor.authorEBBELS, Timothy
hal.structure.identifierMedical Research Council Human Nutrition Research
dc.contributor.authorGRIFFIN, Julian L.
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMOING, Annick
hal.structure.identifierLaboratoire Bordelais de Recherche en Informatique [LaBRI]
hal.structure.identifierCentre de Bioinformatique de Bordeaux [CBIB]
dc.contributor.authorNIKOLSKI, Macha
hal.structure.identifierZora Biosciences
dc.contributor.authorORESIC, Matej
hal.structure.identifierOxford e-Research Centre [Oxford]
dc.contributor.authorSANSONE, Susanna-Assunta
hal.structure.identifierSchool of Biosciences
dc.contributor.authorVIANT, Mark R.
hal.structure.identifierUniversity of Manchester [Manchester]
dc.contributor.authorGOODACRE, Royston
hal.structure.identifierSchool of Cancer Sciences
dc.contributor.authorGÜNTHER, Ulrich L.
hal.structure.identifierDivision of Analytical Biosciences, Leiden Academic Center for Drug Research, Leiden University
dc.contributor.authorHANKEMEIER, Thomas
hal.structure.identifierMagnetic Resonance Center
dc.contributor.authorLUCHINAT, Claudio
hal.structure.identifierMax Planck Institute of Molecular Plant Physiology [MPI-MP]
dc.contributor.authorWALTHER, Dirk
hal.structure.identifierEuropean Bioinformatics Institute [Hinxton] [EMBL-EBI]
dc.contributor.authorSTEINBECK, Christoph
dc.date.issued2015-05-26
dc.identifier.issn1573-3882
dc.description.abstractEnMetabolomics has become a crucial phenotyping technique in a range of research fields including medicine, the life sciences, biotechnology and the environmental sciences. This necessitates the transfer of experimental information between research groups, as well as potentially to publishers and funders. After the initial efforts of the metabolomics standards initiative, minimum reporting standards were proposed which included the concepts for metabolomics databases. Built by the community, standards and infrastructure for metabolomics are still needed to allow storage, exchange, comparison and re-utilization of metabolomics data. The Framework Programme 7 EU Initiative ‘coordination of standards in metabolomics’ (COSMOS) is developing a robust data infrastructure and exchange standards for metabolomics data and metadata. This is to support workflows for a broad range of metabolomics applications within the European metabolomics community and the wider metabolomics and biomedical communities’ participation. Here we announce our concepts and efforts asking for re-engagement of the metabolomics community, academics and industry, journal publishers, software and hardware vendors, as well as those interested in standardisation worldwide (addressing missing metabolomics ontologies, complex-metadata capturing and XML based open source data exchange format), to join and work towards updating and implementing metabolomics standards.
dc.language.isoen
dc.publisherSpringer Verlag
dc.subject.enMetabolomics
dc.subject.enMetabonomics
dc.subject.enData standards
dc.subject.enData exchange
dc.subject.ene-Infrastructure
dc.subject.enCoordination and data sharing community
dc.title.enCOordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access
dc.typeArticle de revue
dc.identifier.doi10.1007/s11306-015-0810-y
dc.subject.halInformatique [cs]/Bio-informatique [q-bio.QM]
dc.description.sponsorshipEuropeDeveloping an efficient e-infrastructure, standards and data-flow for metabolomics and its interface to biomedical and life science e-infrastructures in Europe and world-wide
bordeaux.journalMetabolomics
bordeaux.pageJournal no. 11306
bordeaux.volume11
bordeaux.issue6
bordeaux.peerReviewedoui
hal.identifierhal-01165673
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-01165673v1
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