Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map.
FALQUE, Matthieu
Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) [GQE-Le Moulon]
Voir plus >
Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) [GQE-Le Moulon]
FALQUE, Matthieu
Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) [GQE-Le Moulon]
< Réduire
Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) [GQE-Le Moulon]
Langue
en
Article de revue
Ce document a été publié dans
Plant Journal. 2015, vol. 84, n° 6, p. 1257-1273
Wiley
Résumé en anglais
Single nucleotide polymorphism (SNP) arrays represent important genotyping tools for innovative strategies in both basic research and applied breeding. Pea is an important food, feed and sustainable crop with a large (about ...Lire la suite >
Single nucleotide polymorphism (SNP) arrays represent important genotyping tools for innovative strategies in both basic research and applied breeding. Pea is an important food, feed and sustainable crop with a large (about 4.45 Gbp) but not yet available genome sequence. In the present study, 12 pea recombinant inbred line populations were genotyped using the newly developed GenoPea 13.2K SNP Array. Individual and consensus genetic maps were built providing insights into the structure and organization of the pea genome. Largely collinear genetic maps of 3918-8503 SNPs were obtained from all mapping populations, and only two of these exhibited putative chromosomal rearrangement signatures. Similar distortion patterns in different populations were noted. A total of 12 802 transcript-derived SNP markers placed on a 15 079-marker high-density, high-resolution consensus map allowed the identification of ohnologue-rich regions within the pea genome and the localization of local duplicates. Dense syntenic networks with sequenced legume genomes were further established, paving the way for the identification of the molecular bases of important agronomic traits segregating in the mapping populations. The information gained on the structure and organization of the genome from this research will undoubtedly contribute to the understanding of the evolution of the pea genome and to its assembly. The GenoPea 13.2K SNP Array and individual and consensus genetic maps are valuable genomic tools for plant scientists to strengthen pea as a model for genetics and physiology and enhance breeding.< Réduire
Mots clés
polymorphisme nucléotidique simple (SNP)
pisum sativum
carte génétique
marqueur génomique
organisation du génôme
Mots clés en anglais
synteny
recombinant inbred lines
pea (Pisum sativum L.)
genome structure and organization
duplication
peas
genetic mapping
GenoPea 13.2K SNP Array
consensus genetic map
single nucleotide polymorphism
Project ANR
Génomique comparative du cycle de l'azote entre M. truncatula et le pois : étude des potentialités de transfert des connaissances entre espèces modèles et cultivées - ANR-09-GENM-0026
Origine
Importé de halUnités de recherche