Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species
| hal.structure.identifier | Ecologie des forêts de Guyane [UMR ECOFOG] | |
| dc.contributor.author | TYSKLIND, Niklas | |
| hal.structure.identifier | Thünen Institute of Forest Genetics | |
| dc.contributor.author | BLANC-JOLIVET, Celine | |
| hal.structure.identifier | Thünen Institute of Forest Genetics | |
| dc.contributor.author | MADER, Malte | |
| hal.structure.identifier | Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP] | |
| dc.contributor.author | MEYER-SAND, Barbara R. V. | |
| hal.structure.identifier | Universidad Autonoma Gabriel René Moreno | |
| dc.contributor.author | PAREDES-VILLANUEVA, Kathelyn | |
| hal.structure.identifier | Instituto de Investigaciones de la Amazonía Peruana [IIAP] | |
| dc.contributor.author | HONORIO CORONADO, Eurídice N. | |
| hal.structure.identifier | Instituto de Investigaciones de la Amazonía Peruana [IIAP] | |
| dc.contributor.author | GARCÍA-DÁVILA, Carmen R. | |
| hal.structure.identifier | Instituto Florestal de São Paulo | |
| dc.contributor.author | SEBBENN, Alexandre M. | |
| hal.structure.identifier | Ecologie des forêts de Guyane [UMR ECOFOG] | |
| dc.contributor.author | CARON, Henri | |
| hal.structure.identifier | Ecologie des forêts de Guyane [UMR ECOFOG] | |
| dc.contributor.author | TROISPOUX, Valérie | |
| hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
| dc.contributor.author | GUICHOUX, Erwan | |
| hal.structure.identifier | Thünen Institute of Forest Genetics | |
| dc.contributor.author | DEGEN, Bernd | |
| dc.date.issued | 2019 | |
| dc.identifier.issn | 1877-7252 | |
| dc.description.abstractEn | Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping. | |
| dc.description.sponsorship | Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016 | |
| dc.description.sponsorship | CEnter of the study of Biodiversity in Amazonia - ANR-10-LABX-0025 | |
| dc.language.iso | en | |
| dc.publisher | Springer | |
| dc.subject | Carapa surinamensis | |
| dc.subject.en | DNA-fingerprints | |
| dc.subject.en | geographical origin | |
| dc.subject.en | MiSeq | |
| dc.subject.en | RADSeq | |
| dc.subject.en | tropical timber | |
| dc.subject.en | massARRAY | |
| dc.subject.en | Carapa guianensis | |
| dc.title.en | Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1007/s12686-019-01090-2 | |
| dc.subject.hal | Sciences du Vivant [q-bio] | |
| bordeaux.journal | Conservation Genetics Resources | |
| bordeaux.page | 337-339 | |
| bordeaux.volume | 11 | |
| bordeaux.issue | 3 | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-02619672 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-02619672v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2019&rft.volume=11&rft.issue=3&rft.spage=337-339&rft.epage=337-339&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=TYSKLIND,%20Niklas&BLANC-JOLIVET,%20Celine&MADER,%20Malte&MEYER-SAND,%20Barbara%20R.%20V.&PAREDES-VILLANUEVA,%20Kathelyn&rft.genre=article |
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