Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species
MEYER-SAND, Barbara R. V.
Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
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Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
Language
en
Article de revue
This item was published in
Conservation Genetics Resources. 2019, vol. 11, n° 3, p. 337-339
Springer
English Abstract
Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear ...Read more >
Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping.Read less <
Keywords
Carapa surinamensis
English Keywords
DNA-fingerprints
geographical origin
MiSeq
RADSeq
tropical timber
massARRAY
Carapa guianensis
ANR Project
Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016
CEnter of the study of Biodiversity in Amazonia - ANR-10-LABX-0025
CEnter of the study of Biodiversity in Amazonia - ANR-10-LABX-0025
Origin
Hal imported