Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species
MEYER-SAND, Barbara R. V.
Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
< Réduire
Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
Langue
en
Article de revue
Ce document a été publié dans
Conservation Genetics Resources. 2019, vol. 11, n° 3, p. 337-339
Springer
Résumé en anglais
Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear ...Lire la suite >
Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping.< Réduire
Mots clés
Carapa surinamensis
Mots clés en anglais
DNA-fingerprints
geographical origin
MiSeq
RADSeq
tropical timber
massARRAY
Carapa guianensis
Project ANR
Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016
CEnter of the study of Biodiversity in Amazonia
CEnter of the study of Biodiversity in Amazonia
Origine
Importé de halUnités de recherche