Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia
MEYER-SAND, Barbara R. V.
Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
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Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
Language
en
Article de revue
This item was published in
Conservation Genetics Resources. 2019, vol. 11, n° 3, p. 341-343
Springer
English Abstract
Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber ...Read more >
Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia. We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin.Read less <
English Keywords
DNA-fingerprints
geographical origin
MiSeq
RADSeq
tropical timber
massARRAY
Jacaranda copaia
ANR Project
Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016
CEnter of the study of Biodiversity in Amazonia
CEnter of the study of Biodiversity in Amazonia
Origin
Hal imported