SOULARUE, Jean-Paul; THÖNI, Armel; ARNOUX, Léo; LE CORRE, Valérie; KREMER, Antoine

doi:10.1111/1755-0998.12958

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SOULARUE, Jean-Paul
Biodiversité, Gènes & Communautés [BioGeCo]

THÖNI, Armel
Biodiversité, Gènes & Communautés [BioGeCo]
Laboratoire d'étude des Interactions Sol - Agrosystème - Hydrosystème [UMR LISAH]

ARNOUX, Léo
Biodiversité, Gènes & Communautés [BioGeCo]

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Article de revue

Ce document a été publié dans

Molecular Ecology Resources. 2019, vol. 19, n° 1, p. 296-305

Wiley/Blackwell

Résumé en anglais

Metapop is a stochastic individual‐based simulation program. It uses quantitative genetics theory to produce an explicit description of the typical life cycle of monoecious and hermaphroditic plant species. Genome structure, the relationship between genotype and phenotype, and the effects of landscape heterogeneity on each individual can be finely parameterized by the user. Unlike most existing simulation packages, Metapop can simulate phenotypic plasticity, which may have a genetic component, and assortative mating, two important features of tree species. Each simulation is parameterized through text files, and raw data are generated recurrently, describing the allelic state of each quantitative trait locus involved in phenotypic variability. The data can be generated in Genepop or Fstat format, and may thus be analysed with other existing packages. Metapop also automatically computes a range of populations statistics, enabling the user to monitor evolutionary dynamics directly, from gene to metapopulation level.< Réduire

DOI

http://dx.doi.org/10.1111/1755-0998.12958

Project ANR

COntinental To coastal Ecosystems: evolution, adaptability and governance - ANR-10-LABX-0045
Mécanismes de l'adaptation au Changement Climatique: comment plasticité phénotypique, micro-évolution et migration affecteront-elles la phénologie des arbres forestiers ? - ANR-13-ADAP-0006

Origine

Importé de hal

Unités de recherche

BioGeCo (Biodiversité Gènes & Communautés) - UMR 1202