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Metapop: An individual-based model for simulating the evolution of tree populations in spatially and temporally heterogeneous landscapes

hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorSOULARUE, Jean-Paul
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
hal.structure.identifierLaboratoire d'étude des Interactions Sol - Agrosystème - Hydrosystème [UMR LISAH]
dc.contributor.authorTHÖNI, Armel
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorARNOUX, Léo
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorLE CORRE, Valérie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorKREMER, Antoine
dc.date.issued2019
dc.identifier.issn1755-098X
dc.description.abstractEnMetapop is a stochastic individual‐based simulation program. It uses quantitative genetics theory to produce an explicit description of the typical life cycle of monoecious and hermaphroditic plant species. Genome structure, the relationship between genotype and phenotype, and the effects of landscape heterogeneity on each individual can be finely parameterized by the user. Unlike most existing simulation packages, Metapop can simulate phenotypic plasticity, which may have a genetic component, and assortative mating, two important features of tree species. Each simulation is parameterized through text files, and raw data are generated recurrently, describing the allelic state of each quantitative trait locus involved in phenotypic variability. The data can be generated in Genepop or Fstat format, and may thus be analysed with other existing packages. Metapop also automatically computes a range of populations statistics, enabling the user to monitor evolutionary dynamics directly, from gene to metapopulation level.
dc.description.sponsorshipCOntinental To coastal Ecosystems: evolution, adaptability and governance - ANR-10-LABX-0045
dc.description.sponsorshipMécanismes de l'adaptation au Changement Climatique: comment plasticité phénotypique, micro-évolution et migration affecteront-elles la phénologie des arbres forestiers ? - ANR-13-ADAP-0006
dc.language.isoen
dc.publisherWiley/Blackwell
dc.title.enMetapop: An individual-based model for simulating the evolution of tree populations in spatially and temporally heterogeneous landscapes
dc.typeArticle de revue
dc.identifier.doi10.1111/1755-0998.12958
dc.subject.halSciences du Vivant [q-bio]
dc.subject.halSciences de l'environnement
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
bordeaux.journalMolecular Ecology Resources
bordeaux.page296-305
bordeaux.volume19
bordeaux.issue1
bordeaux.peerReviewedoui
hal.identifierhal-02620430
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02620430v1
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