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Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees

hal.structure.identifierUniversidade de São Paulo = University of São Paulo [USP]
dc.contributor.authorCHAVES, Camila L.
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorBLANC-JOLIVET, Celine
hal.structure.identifierInstituto Florestal de São Paulo
dc.contributor.authorSEBBENN, Alexandre M.
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorMADER, Malte
hal.structure.identifierUniversidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
dc.contributor.authorMEYER-SAND, Barbara R. V.
hal.structure.identifierUniversidad Autonoma Gabriel René Moreno
dc.contributor.authorPAREDES-VILLANUEVA, Kathelyn
hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorHONORIO CORONADO, Eurídice N.
hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorGARCÍA-DÁVILA, Carmen R.
hal.structure.identifierEcologie des forêts de Guyane [UMR ECOFOG]
dc.contributor.authorTYSKLIND, Niklas
hal.structure.identifierEcologie des forêts de Guyane [UMR ECOFOG]
dc.contributor.authorTROISPOUX, Valérie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorMASSOT, Marie
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorDEGEN, Bernd
dc.date.issued2019
dc.identifier.issn1877-7252
dc.description.abstractEnWe developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.
dc.description.sponsorshipPlateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur "
dc.description.sponsorshipOptique Ultrarapide, Nanophotonique et Plasmonique
dc.description.sponsorshipCEnter of the study of Biodiversity in Amazonia
dc.language.isoen
dc.publisherSpringer
dc.subject.enDNA-fingerprints
dc.subject.engeographical origin
dc.subject.enMiSeq
dc.subject.enRADSeq
dc.title.enNuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees
dc.typeArticle de revue
dc.identifier.doi10.1007/s12686-018-1077-1
dc.subject.halSciences du Vivant [q-bio]
bordeaux.journalConservation Genetics Resources
bordeaux.page329-331
bordeaux.volume11
bordeaux.issue3
bordeaux.peerReviewedoui
hal.identifierhal-02628115
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02628115v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2019&rft.volume=11&rft.issue=3&rft.spage=329-331&rft.epage=329-331&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=CHAVES,%20Camila%20L.&BLANC-JOLIVET,%20Celine&SEBBENN,%20Alexandre%20M.&MADER,%20Malte&MEYER-SAND,%20Barbara%20R.%20V.&rft.genre=article


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