FERRY DUMAZET, Hélène; HOUEL, Gwenn; MONTALENT, Pierre; MOREAU, Luc; LANGELLA, Olivier; NÉGRONI, Luc; VINCENT, Delphine; LALANNE, Céline; DE DARUVAR, Antoine; PLOMION, Christophe; ZIVY, Michel; JOETS, Johann

doi:10.1002/pmic.200401111

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FERRY DUMAZET, Hélène
Centre de Bioinformatique de Bordeaux [CBIB]

HOUEL, Gwenn
Génétique Végétale [GV]

MONTALENT, Pierre
Génétique Végétale [GV]

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Article de revue

Ce document a été publié dans

Proteomics. 2005, vol. 5, n° 8, p. 2069-2081

Wiley-VCH Verlag

Résumé en anglais

PROTICdb is a web-based application, mainly designed to store and analyze plant proteome data obtained by two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) and mass spectrometry (MS). The purposes of PROTICdb are (i) to store, track, and query information related to proteomic experiments, i.e., from tissue sampling to protein identification and quantitative measurements, and (ii) to integrate information from the user's own expertise and other sources into a knowledge base, used to support data interpretation (e.g., for the determination of allelic variants or products of post-translational modifications). Data insertion into the relational database of PROTICdb is achieved either by uploading outputs of image analysis and MS identification software, or by filling web forms. 2-D PAGE annotated maps can be displayed, queried, and compared through a graphical interface. Links to external databases are also available. Quantitative data can be easily exported in a tabulated format for statistical analyses. PROTICdb is based on the Oracle or the PostgreSQL Database Management System< Réduire

Mots clés

COMPARATIVE PROTEOMICS

BASE DE DONNEES

Mots clés en anglais

DATABASE

MASS SPECTROMETRY

TWO DIMENSIONAL GEL ELECTROPHORESIS

ELECTROPHORESE BIDIMENTIONELLE

WEB