PROTICdb: a web-based application to store, track, query, and compare plant proteome data
Idioma
en
Article de revue
Este ítem está publicado en
Proteomics. 2005, vol. 5, n° 8, p. 2069-2081
Wiley-VCH Verlag
Resumen en inglés
PROTICdb is a web-based application, mainly designed to store and analyze plant proteome data obtained by two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) and mass spectrometry (MS). The purposes of PROTICdb ...Leer más >
PROTICdb is a web-based application, mainly designed to store and analyze plant proteome data obtained by two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) and mass spectrometry (MS). The purposes of PROTICdb are (i) to store, track, and query information related to proteomic experiments, i.e., from tissue sampling to protein identification and quantitative measurements, and (ii) to integrate information from the user's own expertise and other sources into a knowledge base, used to support data interpretation (e.g., for the determination of allelic variants or products of post-translational modifications). Data insertion into the relational database of PROTICdb is achieved either by uploading outputs of image analysis and MS identification software, or by filling web forms. 2-D PAGE annotated maps can be displayed, queried, and compared through a graphical interface. Links to external databases are also available. Quantitative data can be easily exported in a tabulated format for statistical analyses. PROTICdb is based on the Oracle or the PostgreSQL Database Management System< Leer menos
Palabras clave
COMPARATIVE PROTEOMICS
BASE DE DONNEES
Palabras clave en inglés
DATABASE
MASS SPECTROMETRY
TWO DIMENSIONAL GEL ELECTROPHORESIS
ELECTROPHORESE BIDIMENTIONELLE
WEB
Orígen
Importado de HalCentros de investigación