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Identification of a set of SNPs markers for parentage analysis of the mediterranean red coral (Corallium rubrum)

hal.structure.identifierLaboratoire d'Ecogéochimie des environnements benthiques [LECOB]
hal.structure.identifierUniversità degli Studi di Cagliari = University of Cagliari = Université de Cagliari [UniCa]
dc.contributor.authorGIORDANO, Bruna
hal.structure.identifierBiologie intégrative des organismes marins [BIOM]
dc.contributor.authorDARIC, Vladimir
hal.structure.identifierLaboratoire d'Ecogéochimie des environnements benthiques [LECOB]
dc.contributor.authorBRAMANTI, Lorenzo
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorDELCAMP, Adline
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierUniversità degli Studi di Cagliari = University of Cagliari = Université de Cagliari [UniCa]
dc.contributor.authorCANNAS, Rita
hal.structure.identifierLaboratoire d'Ecogéochimie des environnements benthiques [LECOB]
dc.contributor.authorGUIZIEN, Katell
dc.date.issued2025-07-02
dc.identifier.issn1877-7252
dc.description.abstractEnA set of single nucleotide polymorphism (SNPs) markers was developed from the transcriptome of ten individuals of the Mediterranean red coral (Corallium rubrum). Seven hundred sixty-five putative SNPs, suitable as genetic markers, were identified, and a subset of 320 SNPs was tested using a MassARRAY System on 71 samples. A total of 179 SNPs were successfully genotyped, and 123 of them were polymorphic, with unambiguous signals, and in Hardy-Weinberg equilibrium, showing a significant Linkage Disequilibrium in 20 pairs of SNPs. The newly developed markers will be a useful tool for population genetics and parentage studies of this valuable octocoral.
dc.language.isoen
dc.publisherSpringer
dc.subject.enGenotyping
dc.subject.enMassARRAY
dc.subject.enRNA-seq
dc.subject.enCnidarian
dc.subject.enCorallium rubrum
dc.subject.enSingle nucleotide polymorphism
dc.title.enIdentification of a set of SNPs markers for parentage analysis of the mediterranean red coral (Corallium rubrum)
dc.typeArticle de revue
dc.identifier.doi10.1007/s12686-025-01395-5
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
bordeaux.journalConservation Genetics Resources
bordeaux.peerReviewedoui
hal.identifierhal-05163208
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-05163208v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2025-07-02&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=GIORDANO,%20Bruna&DARIC,%20Vladimir&BRAMANTI,%20Lorenzo&DELCAMP,%20Adline&GUICHOUX,%20Erwan&rft.genre=article


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