Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology
CAMBON, Marine
Birmingham Institute of Forest Research [BIFoR]
Institute of Microbiology and Infection
Birmingham Institute of Forest Research [BIFoR]
Institute of Microbiology and Infection
LABARTHE, Simon
Biodiversité, Gènes & Communautés [BioGeCo]
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
Biodiversité, Gènes & Communautés [BioGeCo]
Pleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
THIS, Patrice
Amélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP]
Géno-vigne® [UMT Géno-vigne®]
< Réduire
Amélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP]
Géno-vigne® [UMT Géno-vigne®]
Langue
en
Article de revue
Ce document a été publié dans
Environmental Microbiome. 2025-03-27, vol. 20, p. 37
BioMedCentral
Résumé en anglais
Background: Plant and soil microbiomes can interfere with pathogen life cycles, but their influence on disease epidemiology remains understudied. Here, we analyzed the relationships between plant and soil microbiomes and ...Lire la suite >
Background: Plant and soil microbiomes can interfere with pathogen life cycles, but their influence on disease epidemiology remains understudied. Here, we analyzed the relationships between plant and soil microbiomes and longterm epidemiological records of grapevine downy mildew, a major disease caused by the oomycete Plasmopara viticola. Results: We found that certain microbial taxa were consistently more abundant in plots with lower disease incidence and severity and that the microbial community composition could predict disease incidence and severity. Microbial diversity was not strongly linked to epidemiological records, suggesting that disease incidence and severity is more related to the abundance of specific microbial taxa. These key taxa were identified in the topsoil, where the pathogen's oospores overwinter, and in the phyllosphere, where zoospores infect leaves. By contrast, the leaf endosphere, where the pathogen's mycelium develops, contained few taxa of interest. Surprisingly, the soil microbiota was a better predictor of disease incidence and severity than the leaf microbiota, suggesting that the soil microbiome could be a key indicator of the dynamics of this primarily aerial disease. Conclusion: Our study integrates long-term epidemiological data with microbiome profiles of healthy plants to reveal fungi and bacteria relevant for the biocontrol of grapevine downy mildew. The resulting database provides a valuable resource for designing microbial consortia with potential biocontrol activity. The framework can be applied to other crop systems to guide the development of biocontrol strategies and reduce pesticide use in agriculture.< Réduire
Mots clés en anglais
Microbial ecology
Disease biocontrol
Oomycete
Vitis vinifera
Plasmopara viticola
Soil
Phyllosphere
Endosphere
Metabarcoding
Differential abundance analysis
Project ANR
Cultivating the grapevine without pesticides : towards agroecological wine-producing socio-ecosystems - ANR-20-PCPA-0010
Origine
Importé de halUnités de recherche