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Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
hal.structure.identifier | Collège Doctoral | |
dc.contributor.author | MENEU, Léa | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
dc.contributor.author | CHAPARD, Christophe | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
dc.contributor.author | SERIZAY, Jacques | |
hal.structure.identifier | Structure et Instabilité des Génomes [STRING] | |
dc.contributor.author | WESTBROOK, Alex | |
hal.structure.identifier | Collège Doctoral | |
hal.structure.identifier | Structure et Instabilité des Génomes [STRING] | |
hal.structure.identifier | Laboratoire de Physique Théorique de la Matière Condensée [LPTMC] | |
dc.contributor.author | ROUTHIER, Etienne | |
hal.structure.identifier | Dynamique du noyau [Institut Curie] | |
dc.contributor.author | RUAULT, Myriam | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
hal.structure.identifier | Collège Doctoral | |
dc.contributor.author | PERROT, Manon | |
hal.structure.identifier | Institut de Génétique Moléculaire de Montpellier [IGMM] | |
dc.contributor.author | MINAKAKIS, Alexandros | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
dc.contributor.author | GIRARD, Fabien | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
hal.structure.identifier | Collège Doctoral | |
dc.contributor.author | BIGNAUD, Amaury | |
hal.structure.identifier | Dynamique du noyau [Institut Curie] | |
dc.contributor.author | EVEN, Antoine | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | GOURGUES, Géraldine | |
hal.structure.identifier | Institut de Génétique Moléculaire de Montpellier [IGMM] | |
dc.contributor.author | LIBRI, Domenico | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | LARTIGUE, Carole | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
dc.contributor.author | PIAZZA, Aurèle | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
dc.contributor.author | THIERRY, Agnès | |
hal.structure.identifier | Dynamique du noyau [Institut Curie] | |
dc.contributor.author | TADDEI, Angela | |
hal.structure.identifier | Unité de biologie Moléculaire, Cellulaire et du Développement [MCD] | |
dc.contributor.author | BECKOUËT, Frédéric | |
hal.structure.identifier | Structure et Instabilité des Génomes [STRING] | |
hal.structure.identifier | Laboratoire de Physique Théorique de la Matière Condensée [LPTMC] | |
hal.structure.identifier | Acquisition et Analyse de Données pour l'Histoire naturelle [2AD] | |
dc.contributor.author | MOZZICONACCI, Julien | |
hal.structure.identifier | Régulation spatiale des Génomes - Spatial Regulation of Genomes | |
dc.contributor.author | KOSZUL, Romain | |
dc.date.issued | 2025-02-07 | |
dc.identifier.issn | 0036-8075 | |
dc.description.abstractEn | In eukaryotes, DNA-associated protein complexes coevolve with genomic sequences to orchestrate chromatin folding. We investigate the relationship between DNA sequence and the spontaneous loading and activity of chromatin components in the absence of coevolution. Using bacterial genomes integrated into Saccharomyces cerevisiae , which diverged from yeast more than 2 billion years ago, we show that nucleosomes, cohesins, and associated transcriptional machinery can lead to the formation of two different chromatin archetypes, one transcribed and the other silent, independently of heterochromatin formation. These two archetypes also form on eukaryotic exogenous sequences, depend on sequence composition, and can be predicted using neural networks trained on the native genome. They do not mix in the nucleus, leading to a bipartite nuclear compartmentalization, reminiscent of the organization of vertebrate nuclei. | |
dc.description.sponsorship | Amplification des centrioles: Nature, conséquences et acteurs moléculaires impliqués dans les réarrangements chromosomique et cytoplasmique | |
dc.description.sponsorship | Décryptage des déterminants permettant le repliement du génome sous l'action de la cohésine - ANR-22-CE12-0013 | |
dc.description.sponsorship | Distanciation Génomique chez la levure - ANR-21-CE12-0040 | |
dc.description.sponsorship | Organisation et montée en puissance d'une Infrastructure Nationale de Génomique | |
dc.description.sponsorship | Développment d'une infrastructure française distribuée coordonnée - ANR-10-INBS-0004 | |
dc.language.iso | en | |
dc.publisher | American Association for the Advancement of Science (AAAS) | |
dc.title.en | Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1126/science.adm9466 | |
dc.subject.hal | Sciences du Vivant [q-bio] | |
dc.subject.hal | Sciences du Vivant [q-bio]/Microbiologie et Parasitologie | |
dc.description.sponsorshipEurope | Investigating the functional architecture of microbial genomes with synthetic approaches | |
bordeaux.journal | Science | |
bordeaux.page | eadm9466 | |
bordeaux.volume | 387 | |
bordeaux.issue | 6734 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-04937691 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-04937691v1 | |
bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Science&rft.date=2025-02-07&rft.volume=387&rft.issue=6734&rft.spage=eadm9466&rft.epage=eadm9466&rft.eissn=0036-8075&rft.issn=0036-8075&rft.au=MENEU,%20L%C3%A9a&CHAPARD,%20Christophe&SERIZAY,%20Jacques&WESTBROOK,%20Alex&ROUTHIER,%20Etienne&rft.genre=article |
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