High-performance comparative annotation
hal.structure.identifier | Laboratoire Bordelais de Recherche en Informatique [LaBRI] | |
hal.structure.identifier | Models and Algorithms for the Genome [ MAGNOME] | |
dc.contributor.author | SHERMAN, David James | |
hal.structure.identifier | Laboratoire Bordelais de Recherche en Informatique [LaBRI] | |
hal.structure.identifier | Models and Algorithms for the Genome [ MAGNOME] | |
dc.contributor.author | LOIRA, Nicolás | |
hal.structure.identifier | Laboratoire Bordelais de Recherche en Informatique [LaBRI] | |
hal.structure.identifier | Models and Algorithms for the Genome [ MAGNOME] | |
dc.contributor.author | GOLENETSKAYA, Natalia | |
dc.contributor.editor | Makeev | |
dc.contributor.editor | Vsevolod and Kucherov | |
dc.contributor.editor | Gregory | |
dc.date.accessioned | 2024-04-15T09:47:52Z | |
dc.date.available | 2024-04-15T09:47:52Z | |
dc.date.issued | 2010-06-15 | |
dc.date.conference | 2010-06-15 | |
dc.identifier.uri | https://oskar-bordeaux.fr/handle/20.500.12278/198133 | |
dc.description.abstractEn | Recent advances in sequencing technology have given rise to a new strategy in genome sequencing: whereas previously it was only possible to sequence and laboriously annotate one genome at a time, we now routinely sequence and compare groups of 5-10 phylogenetically related species and strains at a time. Does it still make sense to assemble whole genomes? We argue yes, on the condition that automatic whole-genome annotation and comparison can be performed on a large scale. We the results that can be obtained with our Magus comparative genomics pipeline, and show how its itegrated, comparative view of related genomes can be exploited for comparative whole-genome metabolic modeling and for high-level data-mining. | |
dc.language.iso | en | |
dc.title.en | High-performance comparative annotation | |
dc.type | Communication dans un congrès | |
dc.subject.hal | Informatique [cs]/Bio-informatique [q-bio.QM] | |
dc.subject.hal | Sciences du Vivant [q-bio]/Bio-Informatique, Biologie Systémique [q-bio.QM] | |
bordeaux.hal.laboratories | Laboratoire Bordelais de Recherche en Informatique (LaBRI) - UMR 5800 | * |
bordeaux.institution | Université de Bordeaux | |
bordeaux.institution | Bordeaux INP | |
bordeaux.institution | CNRS | |
bordeaux.conference.title | Bioinformatics after next-generation sequencing | |
bordeaux.country | RU | |
bordeaux.conference.city | Zvenigorod | |
bordeaux.peerReviewed | oui | |
hal.identifier | inria-00563533 | |
hal.version | 1 | |
hal.invited | oui | |
hal.proceedings | oui | |
hal.conference.organizer | Russian Academy of Sciences | |
hal.conference.end | 2010-06-17 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//inria-00563533v1 | |
bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.date=2010-06-15&rft.au=SHERMAN,%20David%20James&LOIRA,%20Nicol%C3%A1s&GOLENETSKAYA,%20Natalia&rft.genre=unknown |
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