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Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis

dc.rights.licenseopenen_US
dc.contributor.authorFONTDEVILA PARETA, N.
hal.structure.identifierBiologie du fruit et pathologie [BFP]
hal.structure.identifierEcophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV]
dc.contributor.authorKHALILI, M.
dc.contributor.authorMAACHI, A.
dc.contributor.authorRIVAREZ, M.P.S.
dc.contributor.authorROLLIN, J.
dc.contributor.authorSALAVERT, F.
dc.contributor.authorTEMPLE, C.
dc.contributor.authorARANDA, M.A.
dc.contributor.authorBOONHAM, N.
dc.contributor.authorBOTERMANS, M.
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, T.
dc.contributor.authorFOX, A.
dc.contributor.authorHERNANDO, Y.
dc.contributor.authorKUTNJAK, D.
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMARAIS, A.
dc.contributor.authorPETTER, F.
dc.contributor.authorRAVNIKAR, M.
dc.contributor.authorSELMI, I.
dc.contributor.authorTAHZIMA, R.
dc.contributor.authorTRONTIN, C.
dc.contributor.authorWETZEL, T.
dc.contributor.authorMASSART, S.
dc.date.accessioned2024-02-07T16:50:03Z
dc.date.available2024-02-07T16:50:03Z
dc.date.issued2023-05-30
dc.identifier.issn1664-302Xen_US
dc.identifier.urihttps://oskar-bordeaux.fr/handle/20.500.12278/187990
dc.description.abstractEnThe advances in high-throughput sequencing (HTS) technologies and bioinformatic tools have provided new opportunities for virus and viroid discovery and diagnostics. Hence, new sequences of viral origin are being discovered and published at a previously unseen rate. Therefore, a collective effort was undertaken to write and propose a framework for prioritizing the biological characterization steps needed after discovering a new plant virus to evaluate its impact at different levels. Even though the proposed approach was widely used, a revision of these guidelines was prepared to consider virus discovery and characterization trends and integrate novel approaches and tools recently published or under development. This updated framework is more adapted to the current rate of virus discovery and provides an improved prioritization for filling knowledge and data gaps. It consists of four distinct steps adapted to include a multi-stakeholder feedback loop. Key improvements include better prioritization and organization of the various steps, earlier data sharing among researchers and involved stakeholders, public database screening, and exploitation of genomic information to predict biological properties.
dc.language.isoENen_US
dc.rightsAttribution 3.0 United States*
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/us/*
dc.subject.enPlant viruses and viroids
dc.subject.enHigh throughput sequencing (HTS)
dc.subject.enBiological characterization
dc.subject.enPlant health
dc.subject.enRegulatory agencies
dc.subject.enPest risk analysis (PRA)
dc.subject.enVirus disease
dc.title.enManaging the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis
dc.title.alternativeFront. Microbiol.en_US
dc.typeArticle de revueen_US
dc.identifier.doi10.3389/fmicb.2023.1181562en_US
dc.subject.halSciences du Vivant [q-bio]/Biologie végétaleen_US
bordeaux.journalFrontiers in Microbiologyen_US
bordeaux.volume14en_US
bordeaux.hal.laboratoriesEcophysiologie et Génomique Fonctionnelle de la Vigne (EGFV) - UMR 1287en_US
bordeaux.hal.laboratoriesBiologie du fruit et pathologie [BFP]en_US
bordeaux.institutionUniversité de Bordeauxen_US
bordeaux.institutionBordeaux Sciences Agroen_US
bordeaux.institutionINRAEen_US
bordeaux.peerReviewedouien_US
bordeaux.inpressnonen_US
hal.popularnonen_US
hal.audienceInternationaleen_US
hal.exportfalse
dc.rights.ccCC BYen_US
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Frontiers%20in%20Microbiology&rft.date=2023-05-30&rft.volume=14&rft.eissn=1664-302X&rft.issn=1664-302X&rft.au=FONTDEVILA%20PARETA,%20N.&KHALILI,%20M.&MAACHI,%20A.&RIVAREZ,%20M.P.S.&ROLLIN,%20J.&rft.genre=article


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