Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa)
| hal.structure.identifier | Laboratoire d'Ecogéochimie des environnements benthiques [LECOB] | |
| dc.contributor.author | PADRÓN, Mariana | |
| hal.structure.identifier | Génome et Transcriptome - Plateforme Génomique [ GeT-PlaGe] | |
| dc.contributor.author | MILHES, Marine | |
| hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
| dc.contributor.author | DELCAMP, Adline | |
| hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
| dc.contributor.author | GUICHOUX, Erwan | |
| hal.structure.identifier | Laboratoire d'Ecogéochimie des environnements benthiques [LECOB] | |
| dc.contributor.author | GUIZIEN, Katell | |
| dc.date.issued | 2023 | |
| dc.identifier.issn | 1877-7252 | |
| dc.description.abstractEn | A set of single nucleotide polymorphism (SNP) markers was developed from the transcriptome of the solitary ascidian Halocynthia papillosa. 1399 putative SNPs with coverage larger than 100 reads were identified, and a selected set of 320 SNPs was tested using a MassARRAY System on 95 samples from the NW Mediterranean. A total of 175 SNPs were successfully genotyped, polymorphic and in Hardy-Weinberg equilibrium over all samples. The newly developed loci will be a valuable tool for population genetics studies of this endemic ascidian species of the Mediterranean Sea. | |
| dc.language.iso | en | |
| dc.publisher | Springer | |
| dc.rights.uri | http://creativecommons.org/licenses/by/ | |
| dc.subject.en | Halocynthia papillosa | |
| dc.subject.en | Single nucleotide polymorphism | |
| dc.subject.en | MassARRAY | |
| dc.title.en | Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa) | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1007/s12686-023-01313-7 | |
| dc.subject.hal | Sciences de l'environnement | |
| dc.subject.hal | Sciences de l'environnement/Biodiversité et Ecologie | |
| bordeaux.journal | Conservation Genetics Resources | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-04004739 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-04004739v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2023&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=PADR%C3%93N,%20Mariana&MILHES,%20Marine&DELCAMP,%20Adline&GUICHOUX,%20Erwan&GUIZIEN,%20Katell&rft.genre=article |
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