Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa)
Language
en
Article de revue
This item was published in
Conservation Genetics Resources. 2023
Springer
English Abstract
A set of single nucleotide polymorphism (SNP) markers was developed from the transcriptome of the solitary ascidian Halocynthia papillosa. 1399 putative SNPs with coverage larger than 100 reads were identified, and a ...Read more >
A set of single nucleotide polymorphism (SNP) markers was developed from the transcriptome of the solitary ascidian Halocynthia papillosa. 1399 putative SNPs with coverage larger than 100 reads were identified, and a selected set of 320 SNPs was tested using a MassARRAY System on 95 samples from the NW Mediterranean. A total of 175 SNPs were successfully genotyped, polymorphic and in Hardy-Weinberg equilibrium over all samples. The newly developed loci will be a valuable tool for population genetics studies of this endemic ascidian species of the Mediterranean Sea.Read less <
English Keywords
Halocynthia papillosa
Single nucleotide polymorphism
MassARRAY
Origin
Hal imported