Soil composition and rootstock genotype drive the root associated microbial communities in young grapevines
| dc.rights.license | open | en_US |
| hal.structure.identifier | Ecophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV] | |
| dc.contributor.author | DARRIAUT, Romain | |
| dc.contributor.author | ANTONIELLI, Livio | |
| hal.structure.identifier | Unité de Recherche Œnologie [Villenave d'Ornon] [OENO] | |
| dc.contributor.author | MARTINS, Guilherme
ORCID: 0000-0002-4049-3482 IDREF: 164009957 | |
| hal.structure.identifier | Unité de Recherche Œnologie [Villenave d'Ornon] [OENO] | |
| dc.contributor.author | BALLESTRA, Patricia | |
| hal.structure.identifier | Ecophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV] | |
| dc.contributor.author | VIVIN, Philippe | |
| hal.structure.identifier | Ecophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV] | |
| dc.contributor.author | MARGUERIT-JACOB, Elisa
ORCID: 0000-0002-5016-990X IDREF: 127516697 | |
| dc.contributor.author | MITTER, Birgit | |
| hal.structure.identifier | Unité de Recherche Œnologie [Villenave d'Ornon] [OENO] | |
| dc.contributor.author | MASNEUF POMAREDE, Isabelle
ORCID: 0000-0002-8806-8944 IDREF: 13239667X | |
| dc.contributor.author | COMPANT, Stéphane | |
| hal.structure.identifier | Ecophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV] | |
| dc.contributor.author | OLLAT, Nathalie
IDREF: 126740062 | |
| hal.structure.identifier | Ecophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV] | |
| dc.contributor.author | LAUVERGEAT, Virginie
IDREF: 105631000 | |
| dc.date.accessioned | 2023-02-23T13:50:22Z | |
| dc.date.available | 2023-02-23T13:50:22Z | |
| dc.date.issued | 2022-11-10 | |
| dc.identifier.issn | 1664-302X | en_US |
| dc.identifier.other | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA798301 | en_US |
| dc.identifier.other | https://www.frontiersin.org/articles/10.3389/fmicb.2022.1031064/full#supplementary-material | en_US |
| dc.identifier.uri | https://oskar-bordeaux.fr/handle/20.500.12278/172081 | |
| dc.description.abstractEn | Soil microbiota plays a significant role in plant development and health and appears to be a major component of certain forms of grapevine decline. A greenhouse experiment was conducted to study the impact of the microbiological quality of the soil and grapevine rootstock genotype on the root microbial community and development of young plants. Two rootstocks heterografted with the same scion were grown in two vineyard soils differing in microbial composition and activities. After 4 months, culture-dependent approaches and amplicon sequencing of bacterial 16S rRNA gene and fungal ITS were performed on roots, rhizosphere and bulk soil samples. The root mycorrhizal colonization and number of cultivable microorganisms in the rhizosphere compartment of both genotypes were clearly influenced by the soil status. The fungal diversity and richness were dependent on the soil status and the rootstock, whereas bacterial richness was affected by the genotype only. Fungal genera associated with grapevine diseases were more abundant in declining soil and related root samples. The rootstock affected the compartmentalization of microbial communities, underscoring its influence on microorganism selection. Fluorescence in situ hybridization (FISH) confirmed the presence of predominant root-associated bacteria. These results emphasized the importance of rootstock genotype and soil composition in shaping the microbiome of young vines. | |
| dc.language.iso | EN | en_US |
| dc.rights | Attribution 3.0 United States | * |
| dc.rights.uri | http://creativecommons.org/licenses/by/3.0/us/ | * |
| dc.subject.en | Grapevine decline | |
| dc.subject.en | Microbiome | |
| dc.subject.en | Root endosphere | |
| dc.subject.en | Rhizosphere | |
| dc.subject.en | Arbuscular mycorrhizae | |
| dc.title.en | Soil composition and rootstock genotype drive the root associated microbial communities in young grapevines | |
| dc.type | Article de revue | en_US |
| dc.identifier.doi | 10.3389/fmicb.2022.1031064 | en_US |
| dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale | en_US |
| bordeaux.journal | FRONTIERS IN MICROBIOLOGY | en_US |
| bordeaux.volume | 13 | en_US |
| bordeaux.hal.laboratories | Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV) - UMR 1287 | en_US |
| bordeaux.institution | Université de Bordeaux | en_US |
| bordeaux.institution | Bordeaux Sciences Agro | en_US |
| bordeaux.institution | INRAE | en_US |
| bordeaux.peerReviewed | oui | en_US |
| bordeaux.inpress | non | en_US |
| bordeaux.identifier.funderID | France AgriMer | en_US |
| hal.identifier | hal-04002411 | |
| hal.version | 1 | |
| hal.date.transferred | 2023-02-23T13:50:28Z | |
| hal.export | true | |
| dc.rights.cc | CC BY | en_US |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=FRONTIERS%20IN%20MICROBIOLOGY&rft.date=2022-11-10&rft.volume=13&rft.eissn=1664-302X&rft.issn=1664-302X&rft.au=DARRIAUT,%20Romain&ANTONIELLI,%20Livio&MARTINS,%20Guilherme&BALLESTRA,%20Patricia&VIVIN,%20Philippe&rft.genre=article |
