Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | CAMPOY, José | |
| hal.structure.identifier | Géographie de l'environnement [GEODE] | |
| dc.contributor.author | LERIGOLEUR, Emilie | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | CHRISTMANN, Hélène | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | BEAUVIEUX, Rémi | |
| hal.structure.identifier | Services déconcentrés d'appui à la recherche Nouvelle-Aquitaine-Bordeaux [SDAR Nouvelle-Aquitaine-Bordeaux] | |
| dc.contributor.author | GIROLLET, Nabil | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | QUERO-GARCIA, José | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | DIRLEWANGER, Elisabeth | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | BARRENECHE, Teresa | |
| dc.date.issued | 2016 | |
| dc.identifier.issn | 1471-2229 | |
| dc.description.abstractEn | Depiction of the genetic diversity, linkage disequilibrium (LD) and population structure is essential for the efficient organization and exploitation of genetic resources. The objectives of this study were to (i) to evaluate the genetic diversity and to detect the patterns of LD, (ii) to estimate the levels of population structure and (iii) to identify a 'core collection' suitable for association genetic studies in sweet cherry.The present study constitutes the first population genetics analysis in cultivated sweet cherry using a medium-density SNP (single nucleotide polymorphism) marker array. We provided estimations of linkage disequilibrium, genetic structure and the definition of a first INRA’s Sweet Cherry core collection useful for breeding programs, germplasm management and association genetics studies. | |
| dc.language.iso | en | |
| dc.publisher | BioMed Central | |
| dc.subject.en | Linkage disequilibrium | |
| dc.subject.en | Population structure | |
| dc.subject.en | Germplasm management | |
| dc.subject.en | Association genetics | |
| dc.subject.en | Core collection | |
| dc.subject.en | Discriminant analysis | |
| dc.subject.en | Genetic diversity | |
| dc.subject.en | Prunus avium | |
| dc.title.en | Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1186/s12870-016-0712-9 | |
| dc.subject.hal | Sciences du Vivant [q-bio]/Génétique | |
| dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale | |
| bordeaux.journal | BMC Plant Biology | |
| bordeaux.page | 1-15 | |
| bordeaux.volume | 16 | |
| bordeaux.issue | 1 | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-02443918 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-02443918v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=BMC%20Plant%20Biology&rft.date=2016&rft.volume=16&rft.issue=1&rft.spage=1-15&rft.epage=1-15&rft.eissn=1471-2229&rft.issn=1471-2229&rft.au=CAMPOY,%20Jos%C3%A9&LERIGOLEUR,%20Emilie&CHRISTMANN,%20H%C3%A9l%C3%A8ne&BEAUVIEUX,%20R%C3%A9mi&GIROLLET,%20Nabil&rft.genre=article |
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