Determination of the complete genomic sequence of grapevine virus H, a novel vitivirus infecting grapevine.
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | CANDRESSE, Thierry | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | THEIL, Sébastien | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | FAURE, Chantal | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | MARAIS, Armelle | |
dc.date.issued | 2018 | |
dc.identifier.issn | 0304-8608 | |
dc.description.abstractEn | The present work reports the discovery and the complete genome sequencing of a novel member of the genus Vitivirus in the family Betaflexiviridae (subfamily Trivirinae) from a symptomless grapevine of unknown variety from Portugal. Total RNAs extracted from phloem scrapings were sequenced using Illumina technology. Bioinformatic analysis of the RNA-seq data revealed a mixed infection involving three viruses and two viroids in addition to a novel vitivirus. Completion and analysis of the genome sequence (7446 nt excluding the polyA tail) showed a typical vitivirus genomic organization. Phylogenetic analysis of the various ORFs clearly showed the new virus to belong in the genus Vitivirus, but sequence divergence firmly establishes it as a member of a new species, for which the name "Grapevine virus H" is proposed. | |
dc.language.iso | en | |
dc.publisher | Springer Verlag | |
dc.title.en | Determination of the complete genomic sequence of grapevine virus H, a novel vitivirus infecting grapevine. | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1007/s00705-017-3587-7 | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie | |
dc.subject.hal | Sciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie | |
bordeaux.journal | Archives of Virology | |
bordeaux.page | 277-280 | |
bordeaux.volume | 163 | |
bordeaux.issue | 1 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-02624429 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-02624429v1 | |
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