MEGUERDITCHIAN, Caroline; ERGUN, Ayse; DECROOCQ, Véronique; LEFEBVRE, Marie; BUI, Quynh-Trang

doi:10.1101/2021.02.25.432867

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MEGUERDITCHIAN, Caroline
Biologie du fruit et pathologie [BFP]

ERGUN, Ayse
Biologie du fruit et pathologie [BFP]

DECROOCQ, Véronique
Biologie du fruit et pathologie [BFP]

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Peer Community In Genomics. 2021-07-06

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Résumé en anglais

Understanding the relationship between transposable elements (TEs) and their closest positional genes in the host genome is a key point to explore their potential role in genome evolution. Transposable elements can regulate and affect gene expression not only because of their mobility within the genome but also because of their transcriptional activity. A comprehensive knowledge of structural organization between transposable elements and neighboring genes is important to study TE functional role in gene regulation. We implemented a pipeline to display the relationship between the distribution of TEs and adjacent genes in host genomes. Our tool is freely available here: https://github.com/marieBvr/TEs_genes_relationship_pipeline.< Réduire

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Transposable element

Gene

Genome

Bioinformatics

Pipeline

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A pipeline to detect the relationship between transposable elements and adjacent genes in host genomes

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