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Virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses

hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorMOUBSET, Oumaima
hal.structure.identifierUniversity of Oxford
dc.contributor.authorFRANÇOIS, Sarah
hal.structure.identifierGembloux Agro-Bio Tech [Gembloux]
dc.contributor.authorMACLOT, François
hal.structure.identifierInstitut Togolais de Recherche Agronomique [ITRA]
dc.contributor.authorPALANGA, Essowè
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorJULIAN, Charlotte
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
dc.contributor.authorCLAUDE, Lisa
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorFERNANDEZ, Emmanuel
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
dc.contributor.authorROTT, Philippe
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorDAUGROIS, Jean Heinrich
hal.structure.identifierDiversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI]
dc.contributor.authorANTOINE-LORQUIN, Aymeric
hal.structure.identifierEnza Zaden
dc.contributor.authorBERNARDO, Pauline
hal.structure.identifierGembloux Agro-Bio Tech [Gembloux]
hal.structure.identifierAgroscope
dc.contributor.authorBLOUIN, Arnaud
hal.structure.identifierGembloux Agro-Bio Tech [Gembloux]
dc.contributor.authorTEMPLE, Coline
hal.structure.identifierArizona State University [Tempe] [ASU]
dc.contributor.authorKRABERGER, Simona
hal.structure.identifierArizona State University [Tempe] [ASU]
dc.contributor.authorFONTENELE, Rafaela
hal.structure.identifierUniversity of the Western Cape [UWC]
dc.contributor.authorHARKINS, Gordon
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMA, Yuxin
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMARAIS, Armelle
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, Thierry
hal.structure.identifierPeuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorBEN CHÉHIDA, Sélim
hal.structure.identifierPeuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorLEFEUVRE, Pierre
hal.structure.identifierPeuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorLETT, Jean-Michel
hal.structure.identifierArizona State University [Tempe] [ASU]
hal.structure.identifierUniversity of Cape Town
dc.contributor.authorVARSANI, Arvind
hal.structure.identifierGembloux Agro-Bio Tech [Gembloux]
dc.contributor.authorMASSART, Sébastien
hal.structure.identifierDiversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI]
dc.contributor.authorOGLIASTRO, Mylene
hal.structure.identifierUniversity of Cape Town
dc.contributor.authorMARTIN, Darren
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorFILLOUX, Denis
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorROUMAGNAC, Philippe
dc.date.issued2022-12-28
dc.identifier.issn0031-949X
dc.description.abstractEnOver the last decade, viral metagenomic studies have resulted in the discovery of thousands of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an accurate and robust understanding of how viruses affect the stability and productivity of ecosystems. Among the metagenomics-based approaches that have been developed since the beginning of the 21st century, shotgun metagenomics applied specifically to virion-associated nucleic acids (VANA) has been used to disentangle the diversity of the viral world. We summarize herein the results of 24 VANA-based studies, focusing on plant and insect samples conducted over the last decade (2010-2020). Collectively, viruses from 85 different families were reliably detected in these studies, including capsid-less RNA viruses that replicate in fungi, oomycetes and plants. Finally, strengths and weaknesses of the VANA approach are summarized and perspectives of applications in detection, epidemiological surveillance, environmental monitoring and ecology of plant viruses are provided.
dc.description.sponsorshipMesure et cartographie de la richesse des virus des plante à l'échelle de l'écosytème
dc.language.isoen
dc.publisherAmerican Phytopathological Society
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/
dc.subject.enEcology
dc.subject.enPathogen Detection
dc.subject.enVirology
dc.title.enVirion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses
dc.typeArticle de revue
dc.identifier.doi10.1094/PHYTO-03-22-0096-RVW
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
dc.subject.halSciences du Vivant [q-bio]
dc.subject.halSciences du Vivant [q-bio]/Biologie animale/Zoologie des invertébrés
dc.subject.halSciences du Vivant [q-bio]/Biologie cellulaire/Organisation et fonctions cellulaires [q-bio.SC]
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie
dc.description.sponsorshipEuropeInnovative Network for Next Generation Training and Sequencing of Virome
bordeaux.journalPhytopathology
bordeaux.page2253-2272
bordeaux.volume112
bordeaux.issue11
bordeaux.peerReviewedoui
hal.identifierhal-03705057
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-03705057v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Phytopathology&rft.date=2022-12-28&rft.volume=112&rft.issue=11&rft.spage=2253-2272&rft.epage=2253-2272&rft.eissn=0031-949X&rft.issn=0031-949X&rft.au=MOUBSET,%20Oumaima&FRAN%C3%87OIS,%20Sarah&MACLOT,%20Fran%C3%A7ois&PALANGA,%20Essow%C3%A8&JULIAN,%20Charlotte&rft.genre=article


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