Virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses
MOUBSET, Oumaima
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
MACLOT, François
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
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Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
MOUBSET, Oumaima
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
MACLOT, François
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
JULIAN, Charlotte
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
FERNANDEZ, Emmanuel
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
ROTT, Philippe
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
DAUGROIS, Jean Heinrich
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
ANTOINE-LORQUIN, Aymeric
Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI]
Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI]
BLOUIN, Arnaud
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
Agroscope
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
Agroscope
TEMPLE, Coline
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
BEN CHÉHIDA, Sélim
Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
Département Systèmes Biologiques [Cirad-BIOS]
Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
Département Systèmes Biologiques [Cirad-BIOS]
LEFEUVRE, Pierre
Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
Département Systèmes Biologiques [Cirad-BIOS]
Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
Département Systèmes Biologiques [Cirad-BIOS]
LETT, Jean-Michel
Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
Département Systèmes Biologiques [Cirad-BIOS]
Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
Département Systèmes Biologiques [Cirad-BIOS]
MASSART, Sébastien
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
Gembloux Agro-Bio Tech [Faculté universitaire des sciences agronomiques de Gembloux] [[FUSAGx]]
OGLIASTRO, Mylene
Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI]
Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI]
FILLOUX, Denis
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
ROUMAGNAC, Philippe
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
< Reduce
Plant Health Institute of Montpellier [UMR PHIM]
Département Systèmes Biologiques [Cirad-BIOS]
Language
en
Article de revue
This item was published in
Phytopathology. 2022-12-28, vol. 112, n° 11, p. 2253-2272
American Phytopathological Society
English Abstract
Over the last decade, viral metagenomic studies have resulted in the discovery of thousands of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an accurate and robust understanding ...Read more >
Over the last decade, viral metagenomic studies have resulted in the discovery of thousands of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an accurate and robust understanding of how viruses affect the stability and productivity of ecosystems. Among the metagenomics-based approaches that have been developed since the beginning of the 21st century, shotgun metagenomics applied specifically to virion-associated nucleic acids (VANA) has been used to disentangle the diversity of the viral world. We summarize herein the results of 24 VANA-based studies, focusing on plant and insect samples conducted over the last decade (2010-2020). Collectively, viruses from 85 different families were reliably detected in these studies, including capsid-less RNA viruses that replicate in fungi, oomycetes and plants. Finally, strengths and weaknesses of the VANA approach are summarized and perspectives of applications in detection, epidemiological surveillance, environmental monitoring and ecology of plant viruses are provided.Read less <
English Keywords
Ecology
Pathogen Detection
Virology
European Project
Innovative Network for Next Generation Training and Sequencing of Virome
ANR Project
Mesure et cartographie de la richesse des virus des plante à l'échelle de l'écosytème
Origin
Hal importedCollections