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Development of set of SNP markers for population genetics studies of lpe (Handroanthus sp.), a valuable tree genus from Latin America

hal.structure.identifierDepartamento de Fitotecnia, Recnologia de Alimentos e Socio Economia
dc.contributor.authorMEYER-SAND, Barbara R. V.
dc.contributor.authorBLANC-JOLIVET, Celine
dc.contributor.authorMADER, Malte
dc.contributor.authorPAREDES-VILLANUEVA, Kathelyn
hal.structure.identifierEcologie des forêts de Guyane [UMR ECOFOG]
dc.contributor.authorTYSKLIND, Niklas
dc.contributor.authorALEXANDRE, M. Sebben
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
dc.contributor.authorDEGEN, Bernd
dc.date.issued2018
dc.identifier.issn1877-7252
dc.description.abstractEnA combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a MassARRAY® iPLEX™ platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studies
dc.description.sponsorshipPlateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016
dc.description.sponsorshipCEnter of the study of Biodiversity in Amazonia
dc.language.isoen
dc.publisherSpringer
dc.subject.enHandroanthus sp.
dc.subject.ensingle nucleotide polymorphism
dc.subject.enMassARRAY
dc.title.enDevelopment of set of SNP markers for population genetics studies of lpe (Handroanthus sp.), a valuable tree genus from Latin America
dc.typeArticle de revue
dc.identifier.doi10.1007/s12686-017-0928-5
dc.subject.halSciences du Vivant [q-bio]
bordeaux.journalConservation Genetics Resources
bordeaux.page779-781
bordeaux.volume10
bordeaux.issue4
bordeaux.peerReviewedoui
hal.identifierhal-02196135
hal.version1
hal.popularnon
hal.audienceNon spécifiée
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02196135v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2018&rft.volume=10&rft.issue=4&rft.spage=779-781&rft.epage=779-781&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=MEYER-SAND,%20Barbara%20R.%20V.&BLANC-JOLIVET,%20Celine&MADER,%20Malte&PAREDES-VILLANUEVA,%20Kathelyn&TYSKLIND,%20Niklas&rft.genre=article


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