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Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia
| hal.structure.identifier | Instituto Florestal de São Paulo | |
| dc.contributor.author | SEBBENN, Alexandre M. | |
| hal.structure.identifier | Thünen Institute of Forest Genetics | |
| dc.contributor.author | BLANC-JOLIVET, Celine | |
| hal.structure.identifier | Thünen Institute of Forest Genetics | |
| dc.contributor.author | MADER, Malte | |
| hal.structure.identifier | Universidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP] | |
| dc.contributor.author | MEYER-SAND, Barbara R. V. | |
| hal.structure.identifier | Universidad Autonoma Gabriel René Moreno | |
| dc.contributor.author | PAREDES-VILLANUEVA, Kathelyn | |
| hal.structure.identifier | Instituto de Investigaciones de la Amazonía Peruana [IIAP] | |
| dc.contributor.author | HONORIO CORONADO, Eurídice N. | |
| hal.structure.identifier | Instituto de Investigaciones de la Amazonía Peruana [IIAP] | |
| dc.contributor.author | GARCÍA-DÁVILA, Carmen R. | |
| hal.structure.identifier | Ecologie des forêts de Guyane [UMR ECOFOG] | |
| dc.contributor.author | TYSKLIND, Niklas | |
| hal.structure.identifier | Ecologie des forêts de Guyane [UMR ECOFOG] | |
| dc.contributor.author | TROISPOUX, Valérie | |
| hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
| dc.contributor.author | DELCAMP, Adline | |
| hal.structure.identifier | Thünen Institute of Forest Genetics | |
| dc.contributor.author | DEGEN, Bernd | |
| dc.date.issued | 2019 | |
| dc.identifier.issn | 1877-7252 | |
| dc.description.abstractEn | Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia. We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin. | |
| dc.description.sponsorship | Plateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016 | |
| dc.description.sponsorship | CEnter of the study of Biodiversity in Amazonia | |
| dc.language.iso | en | |
| dc.publisher | Springer | |
| dc.subject.en | DNA-fingerprints | |
| dc.subject.en | geographical origin | |
| dc.subject.en | MiSeq | |
| dc.subject.en | RADSeq | |
| dc.subject.en | tropical timber | |
| dc.subject.en | massARRAY | |
| dc.subject.en | Jacaranda copaia | |
| dc.title.en | Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1007/s12686-019-01097-9 | |
| dc.subject.hal | Sciences du Vivant [q-bio] | |
| bordeaux.journal | Conservation Genetics Resources | |
| bordeaux.page | 341-343 | |
| bordeaux.volume | 11 | |
| bordeaux.issue | 3 | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-02619673 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-02619673v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2019&rft.volume=11&rft.issue=3&rft.spage=341-343&rft.epage=341-343&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=SEBBENN,%20Alexandre%20M.&BLANC-JOLIVET,%20Celine&MADER,%20Malte&MEYER-SAND,%20Barbara%20R.%20V.&PAREDES-VILLANUEVA,%20Kathelyn&rft.genre=article |
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