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hal.structure.identifierLaboratoire d'Ecogéochimie des environnements benthiques [LECOB]
dc.contributor.authorPADRÓN, Mariana
hal.structure.identifierGénome et Transcriptome - Plateforme Génomique [ GeT-PlaGe]
dc.contributor.authorMILHES, M.
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorMASSOT, M.
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierLaboratoire d'Ecogéochimie des environnements benthiques [LECOB]
dc.contributor.authorGUIZIEN, Katell
dc.date.created2023-08-11
dc.date.issued2024-02-17
dc.identifier.issn1877-7252
dc.description.abstractEnA set of single nucleotide polymorphisms (SNP) was developed from the transcriptome of 10 individuals of the sea rose Pentapora fascialis (Cheilostomata) collected in Banyuls-sur-Mer Bay (NW Mediterranean sea). 53042 putative SNPs were identified and mapped on a de novo assembled transcriptome. A selected set of 320 SNPs with highest coverage and uniquely mapped in the assembled transcriptome was tested using a MassARRAY System on 95 individuals sampled in natural rocks and artificial reefs distributed over a hundred kilometers in the NW Mediterranean (outisde Banyuls-sur-Mer Bay). A total of 177 SNPs were successfully genotyped and found to be polymorphic. Among these, 154 SNPs were in Hardy-Weinberg equilibrium over all samples, with significant linkage disequilibrium in only 21 pairs of SNPs. The newly developed loci will be a valuable tool for population genetics studies of this calcifying bryozoan species whose erect structure makes it an engineering species and a target for conservation plans.
dc.language.isoen
dc.publisherSpringer
dc.subject.enPentapora fascialis
dc.subject.enSingle nucleotide polymorphism
dc.subject.enMassARRAY
dc.subject.enbryozoan
dc.title.enDevelopment of a set of SNP markers for population genetics of the sea rose, Pentapora fascialis
dc.typeArticle de revue
dc.identifier.doi10.1007/s12686-024-01348-4
dc.subject.halSciences de l'environnement
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
bordeaux.journalConservation Genetics Resources
bordeaux.peerReviewedoui
hal.identifierhal-04501018
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04501018v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2024-02-17&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=PADR%C3%93N,%20Mariana&MILHES,%20M.&MASSOT,%20M.&GUICHOUX,%20Erwan&GUIZIEN,%20Katell&rft.genre=article


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