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dc.rights.licenseopenen_US
dc.contributor.authorLI, Jingjia
dc.contributor.authorWEST, Jason B
dc.contributor.authorHART, Alexander
dc.contributor.authorWEGRZYN, Jill L
dc.contributor.authorSMITH, Matthew A
hal.structure.identifierInteractions Sol Plante Atmosphère [UMR ISPA]
dc.contributor.authorDOMEC, Jean-Christophe
ORCID: 0000-0003-0478-2559
IDREF: 195495667
dc.contributor.authorLOOPSTRA, Carol A
dc.contributor.authorCASOLA, Claudio
dc.date.accessioned2023-11-30T12:26:42Z
dc.date.available2023-11-30T12:26:42Z
dc.date.issued2021-05-31
dc.identifier.issn1664-8021en_US
dc.identifier.urihttps://oskar-bordeaux.fr/handle/20.500.12278/186273
dc.description.abstractEnDrought response is coordinated through expression changes in a large suite of genes. Interspecific variation in this response is common and associated with drought-tolerant and -sensitive genotypes. The extent to which different genetic networks orchestrate the adjustments to water deficit in tolerant and sensitive genotypes has not been fully elucidated, particularly in non-model or woody plants. Differential expression analysis via RNA-seq was evaluated in root tissue exposed to simulated drought conditions in two loblolly pine ( L.) clones with contrasting tolerance to drought. Loblolly pine is the prevalent conifer in southeastern U.S. and a major commercial forestry species worldwide. Significant changes in gene expression levels were found in more than 4,000 transcripts [drought-related transcripts (DRTs)]. Genotype by environment (GxE) interactions were prevalent, suggesting that different cohorts of genes are influenced by drought conditions in the tolerant vs. sensitive genotypes. Functional annotation categories and metabolic pathways associated with DRTs showed higher levels of overlap between clones, with the notable exception of GO categories in upregulated DRTs. Conversely, both differentially expressed transcription factors (TFs) and TF families were largely different between clones. Our results indicate that the response of a drought-tolerant loblolly pine genotype vs. a sensitive genotype to water limitation is remarkably different on a gene-by-gene level, although it involves similar genetic networks. Upregulated transcripts under drought conditions represent the most diverging component between genotypes, which might depend on the activation and repression of substantially different groups of TFs.
dc.language.isoENen_US
dc.rightsAttribution 3.0 United States*
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/us/*
dc.subject.enGxE
dc.subject.enPinus taeda
dc.subject.enRNA-seq
dc.subject.enDifferential gene expression
dc.subject.enDrought tolerance
dc.title.enExtensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes
dc.title.alternativeFront Geneten_US
dc.typeArticle de revueen_US
dc.identifier.doi10.3389/fgene.2021.661440en_US
dc.subject.halSciences de l'environnementen_US
dc.identifier.pubmed34140968en_US
bordeaux.journalFrontiers in Geneticsen_US
bordeaux.page661440en_US
bordeaux.volume12en_US
bordeaux.hal.laboratoriesInteractions Soil Plant Atmosphere (ISPA) - UMR 1391en_US
bordeaux.institutionBordeaux Sciences Agroen_US
bordeaux.institutionINRAEen_US
bordeaux.peerReviewedouien_US
bordeaux.inpressnonen_US
bordeaux.import.sourcepubmed
hal.popularnonen_US
hal.audienceInternationaleen_US
hal.exportfalse
workflow.import.sourcepubmed
dc.rights.ccPas de Licence CCen_US
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Frontiers%20in%20Genetics&rft.date=2021-05-31&rft.volume=12&rft.spage=661440&rft.epage=661440&rft.eissn=1664-8021&rft.issn=1664-8021&rft.au=LI,%20Jingjia&WEST,%20Jason%20B&HART,%20Alexander&WEGRZYN,%20Jill%20L&SMITH,%20Matthew%20A&rft.genre=article


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