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Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa)

hal.structure.identifierLaboratoire d'Ecogéochimie des environnements benthiques [LECOB]
dc.contributor.authorPADRÓN, Mariana
hal.structure.identifierGénome et Transcriptome - Plateforme Génomique [ GeT-PlaGe]
dc.contributor.authorMILHES, Marine
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorDELCAMP, Adline
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierLaboratoire d'Ecogéochimie des environnements benthiques [LECOB]
dc.contributor.authorGUIZIEN, Katell
dc.date.issued2023
dc.identifier.issn1877-7252
dc.description.abstractEnA set of single nucleotide polymorphism (SNP) markers was developed from the transcriptome of the solitary ascidian Halocynthia papillosa. 1399 putative SNPs with coverage larger than 100 reads were identified, and a selected set of 320 SNPs was tested using a MassARRAY System on 95 samples from the NW Mediterranean. A total of 175 SNPs were successfully genotyped, polymorphic and in Hardy-Weinberg equilibrium over all samples. The newly developed loci will be a valuable tool for population genetics studies of this endemic ascidian species of the Mediterranean Sea.
dc.language.isoen
dc.publisherSpringer
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subject.enHalocynthia papillosa
dc.subject.enSingle nucleotide polymorphism
dc.subject.enMassARRAY
dc.title.enDevelopment of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa)
dc.typeArticle de revue
dc.identifier.doi10.1007/s12686-023-01313-7
dc.subject.halSciences de l'environnement
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
bordeaux.journalConservation Genetics Resources
bordeaux.peerReviewedoui
hal.identifierhal-04004739
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04004739v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Conservation%20Genetics%20Resources&rft.date=2023&rft.eissn=1877-7252&rft.issn=1877-7252&rft.au=PADR%C3%93N,%20Mariana&MILHES,%20Marine&DELCAMP,%20Adline&GUICHOUX,%20Erwan&GUIZIEN,%20Katell&rft.genre=article


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