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Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards

hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorORFANIDOU, Chrysoula
hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorKATSIANI, Asimina
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, Thierry
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMARAIS, Armelle
hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorGKREMOTSI, Theodora
hal.structure.identifierHellenic Agricultural Organization Demeter [HAO Demeter]
dc.contributor.authorDROGOUDI, Pavlina
hal.structure.identifierHellenic Agricultural Organization Demeter [HAO Demeter]
dc.contributor.authorKAZANTZIS, Konstantinos
hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorKATIS, Nikolaos
hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorMALIOGKA, Varvara
dc.date.issued2023-10
dc.identifier.issn0304-8608
dc.description.abstractEnIn this study, samples collected from eight sweet cherry trees in northern Greece were analyzed by high-throughput sequencing for the presence of viruses. Bioinformatic analysis revealed the presence of divergent isolates of cherry latent virus 1 (CLV-1), a recently identified trichovirus in a sweet cherry accession imported into the USA from the Republic of Georgia. The complete genome sequences of seven CLV-1 isolates were determined, and phylogenetic analysis indicated that they belonged to a separate clade from the previously characterized Georgian isolate. A small-scale survey confirmed the presence of CLV-1 in 47 out of 151 sweet cherry samples tested, and partial sequencing of 15 isolates showed a high degree of nucleotide sequence similarity among them.
dc.language.isoen
dc.publisherSpringer Verlag
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subject.enGreece trichovirus
dc.subject.encherry latent virus 1
dc.subject.enhigh-throughput sequencing
dc.subject.engenetic diversity
dc.subject.envirome
dc.title.enIdentification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards
dc.typeArticle de revue
dc.identifier.doi10.1007/s00705-023-05875-7
dc.subject.halSciences du Vivant [q-bio]
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie
dc.description.sponsorshipEuropeOperational Program Competitiveness, Entrepreneurship and Innovation, under the call RESEARCH – CREATE – INNOVATE
dc.description.sponsorshipEuropeOperational Program Competitiveness, Entrepreneurship and Innovation, under the call RESEARCH – CREATE – INNOVATE
bordeaux.journalArchives of Virology
bordeaux.page243
bordeaux.volume168
bordeaux.issue10
bordeaux.peerReviewedoui
hal.identifierhal-04228187
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04228187v1
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