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High genetic diversity suggests a long evolutionary history of plum pox virus‐M in Turkey
| hal.structure.identifier | Erciyes University | |
| dc.contributor.author | TEBER, S. | |
| hal.structure.identifier | Erciyes University | |
| dc.contributor.author | GÜRCAN, K. | |
| hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
| dc.contributor.author | BREVET, M. | |
| hal.structure.identifier | National Research Council of Italy | Consiglio Nazionale delle Ricerche [CNR] | |
| dc.contributor.author | PALMISANO, F. | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | CANDRESSE, Thierry | |
| hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
| dc.contributor.author | DALLOT, Sylvie | |
| dc.date.issued | 2023 | |
| dc.identifier.issn | 0032-0862 | |
| dc.description.abstractEn | The genetic diversity and evolutionary history of the epidemic plum pox virus strain M (PPV-M) have been poorly studied. We sequenced the genomes of 69 PPV-M isolates selected from different Turkish regions. These new nearly full-length genomic sequences were analysed together with 21 previously reported Turkish sequences of the PPV-MIs clade and with 50 sequences of other PPV-M isolates collected worldwide, including four sequences of Albanian isolates. Major genomic features were maintained in all new PPV-M genomic sequences, with the highest divergence detected in the PIPO, P1 and CP proteins. Turkish PPV-M isolates displayed a high genetic diversity and grouped into two sister clades, one formed by PPV-MIs isolates only and a second clade consisting of the previously described PPV-Ma and PPV-Mb subclades. The combined diversity for PPV-M isolates (Europe, Japan and Turkey) reached to 0.022 +/- 0.001, which is slightly higher than the diversity of the globally distributed PPV-D strain (0.017 +/- 0.001). Likewise, the genetic diversity of PPV-M (0.020 +/- 0.001) in Turkey was found to be comparable to that observed for PPV-M isolates from other countries (0.021 +/- 0.001) and even marginally higher if considering partial genomic sequences that allow the inclusion of a much larger number of isolates and countries. Overall, the original distribution of PPV-MIs, which seems to be almost specific to Turkey, and the high genetic diversity of PPV-MIs and other Turkish PPV-M isolates suggest a long evolutionary history of M isolates in Turkey and position this country as a centre of diversity of PPV-M. | |
| dc.language.iso | en | |
| dc.publisher | Wiley | |
| dc.subject.en | complete genome | |
| dc.subject.en | molecular epidemiology | |
| dc.subject.en | plant virus | |
| dc.subject.en | plum pox virus | |
| dc.subject.en | sharka | |
| dc.subject.en | stone fruits | |
| dc.title.en | High genetic diversity suggests a long evolutionary history of plum pox virus‐M in Turkey | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1111/ppa.13663 | |
| dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie | |
| bordeaux.journal | Plant Pathology | |
| bordeaux.page | 300-311 | |
| bordeaux.volume | 72 | |
| bordeaux.issue | 2 | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-03842148 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-03842148v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Plant%20Pathology&rft.date=2023&rft.volume=72&rft.issue=2&rft.spage=300-311&rft.epage=300-311&rft.eissn=0032-0862&rft.issn=0032-0862&rft.au=TEBER,%20S.&G%C3%9CRCAN,%20K.&BREVET,%20M.&PALMISANO,%20F.&CANDRESSE,%20Thierry&rft.genre=article |
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