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The Image Data Explorer: Interactive exploration of image-derived data

hal.structure.identifierPleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
hal.structure.identifierEuropean Molecular Biology Laboratory [Heidelberg] [EMBL]
dc.contributor.authorMULLER, Coralie
hal.structure.identifierEuropean Molecular Biology Laboratory [Heidelberg] [EMBL]
dc.contributor.authorSERRANO-SOLANO, Beatriz
hal.structure.identifierEuropean Molecular Biology Laboratory [Heidelberg] [EMBL]
dc.contributor.authorSUN, Yi
hal.structure.identifierEuropean Molecular Biology Laboratory [Heidelberg] [EMBL]
dc.contributor.authorTISCHER, Christian
hal.structure.identifierEuropean Molecular Biology Laboratory [Heidelberg] [EMBL]
dc.contributor.authorHÉRICHÉ, Jean-Karim
dc.date.issued2022-09-15
dc.identifier.issn1932-6203
dc.description.abstractEnMany bioimage analysis projects produce quantitative descriptors of regions of interest in images. Associating these descriptors with visual characteristics of the objects they describe is a key step in understanding the data at hand. However, as many bioimage data and their analysis workflows are moving to the cloud, addressing interactive data exploration in remote environments has become a pressing issue. To address it, we developed the Image Data Explorer (IDE) as a web application that integrates interactive linked visualization of images and derived data points with exploratory data analysis methods, annotation, classification and feature selection functionalities. The IDE is written in R using the shiny framework. It can be easily deployed on a remote server or on a local computer. The IDE is available at https://git.embl.de/heriche/image-data-explorer and a cloud deployment is accessible at https://shiny-portal.embl.de/shinyapps/app/01_image-data-explorer .
dc.language.isoen
dc.publisherPublic Library of Science
dc.title.enThe Image Data Explorer: Interactive exploration of image-derived data
dc.typeArticle de revue
dc.identifier.doi10.1371/journal.pone.0273698
dc.subject.halInformatique [cs]/Bio-informatique [q-bio.QM]
bordeaux.journalPLoS ONE
bordeaux.pagee0273698
bordeaux.volume17
bordeaux.issue9
bordeaux.peerReviewedoui
hal.identifierhal-03830356
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-03830356v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=PLoS%20ONE&rft.date=2022-09-15&rft.volume=17&rft.issue=9&rft.spage=e0273698&rft.epage=e0273698&rft.eissn=1932-6203&rft.issn=1932-6203&rft.au=MULLER,%20Coralie&SERRANO-SOLANO,%20Beatriz&SUN,%20Yi&TISCHER,%20Christian&H%C3%89RICH%C3%89,%20Jean-Karim&rft.genre=article


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