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Leaf microbiome data for European cultivated grapevine (Vitis vinifera L.) during downy mildew (Plasmopara viticola) epidemics in three wine-producing regions in France

hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBARROSO-BERGADÀ, Didac
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
dc.contributor.authorDELMOTTE, François
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorFAIVRE D'ARCIER, Julie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorMASSOT, Marie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorCHANCEREL, Emilie
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
dc.contributor.authorDEMEAUX, Isabelle
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
dc.contributor.authorGUIMIER, Soizic
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBOHAN, David
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
hal.structure.identifierUniversité de Bordeaux [UB]
dc.contributor.authorVACHER, Corinne
dc.date.issued2023
dc.description.abstractEnGrapevine downy mildew (Plasmopara viticola) is a major disease of European cultivatedgrapevine (Vitis vinifera L.) against which a large amount of synthetic pesticides are used. Developing microbial biocontrol of P. viticola could reduce the use of pesticides in viticulture and preserve human and environmental health. To achieve this goal, the ecological interactions that develop during infection between P. viticola and the vine foliar microbiome need to be explored. Here, we present metabarcoding datasets describing the bacterial and fungal communities of pairs of symptomatic and asymptomatic leaf samples collected during downy mildew epidemics in three major wine-producing regions of France. Fungal and bacterial communities were sequenced on a MiSeq Illumina platform, and the abundance of the oomycete P. viticola was quantified using qPCR. We provide the raw metabarcoding datasets, the amplicon sequence variant tables obtained after bioinformatic processing, the metadatadescribing sampling sites and tissue health conditions, and the code used for bioinformatic analysis. These datasets will enable microbiome comparison within pairs of symptomatic and asymptomatic samples collected at the same time on the same leaf. Such a comparison could help describe the ecological interactions between P. viticola and the grapevine foliar microbiome.
dc.description.sponsorshipCultivating the grapevine without pesticides : towards agroecological wine-producing socio-ecosystems - ANR-20-PCPA-0010
dc.description.sponsorshipBiosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes - ANR-17-CE32-0011
dc.description.sponsorshipCOntinental To coastal Ecosystems: evolution, adaptability and governance
dc.language.isoen
dc.publisherAPS
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/
dc.subject.enbacteria
dc.subject.enfungi
dc.subject.enholobiont
dc.subject.enmetabarcoding
dc.subject.enmicrobial community
dc.subject.enmicrobiota
dc.subject.enoomycete
dc.subject.enpathobiome
dc.subject.enphyllosphere
dc.subject.enplant disease
dc.title.enLeaf microbiome data for European cultivated grapevine (Vitis vinifera L.) during downy mildew (Plasmopara viticola) epidemics in three wine-producing regions in France
dc.typeArticle de revue
dc.typeData paper
dc.identifier.doi10.1094/PHYTOFR-11-22-0138-A
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
dc.subject.halSciences du Vivant [q-bio]/Ecologie, Environnement/Interactions entre organismes
dc.subject.halSciences du Vivant [q-bio]/Ecologie, Environnement/Santé
bordeaux.journalPhytoFrontiers™
bordeaux.page477-483
bordeaux.volume3
bordeaux.peerReviewedoui
hal.identifierhal-04059014
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04059014v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=PhytoFrontiers%E2%84%A2&rft.date=2023&rft.volume=3&rft.spage=477-483&rft.epage=477-483&rft.au=BARROSO-BERGAD%C3%80,%20Didac&DELMOTTE,%20Fran%C3%A7ois&FAIVRE%20D'ARCIER,%20Julie&MASSOT,%20Marie&CHANCEREL,%20Emilie&rft.genre=article&unknown


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