Leaf microbiome data for European cultivated grapevine (Vitis vinifera L.) during downy mildew (Plasmopara viticola) epidemics in three wine-producing regions in France
Langue
en
Article de revue
Ce document a été publié dans
PhytoFrontiers™. 2023, vol. 3, p. 477-483
APS
Résumé en anglais
Grapevine downy mildew (Plasmopara viticola) is a major disease of European cultivatedgrapevine (Vitis vinifera L.) against which a large amount of synthetic pesticides are used. Developing microbial biocontrol of P. ...Lire la suite >
Grapevine downy mildew (Plasmopara viticola) is a major disease of European cultivatedgrapevine (Vitis vinifera L.) against which a large amount of synthetic pesticides are used. Developing microbial biocontrol of P. viticola could reduce the use of pesticides in viticulture and preserve human and environmental health. To achieve this goal, the ecological interactions that develop during infection between P. viticola and the vine foliar microbiome need to be explored. Here, we present metabarcoding datasets describing the bacterial and fungal communities of pairs of symptomatic and asymptomatic leaf samples collected during downy mildew epidemics in three major wine-producing regions of France. Fungal and bacterial communities were sequenced on a MiSeq Illumina platform, and the abundance of the oomycete P. viticola was quantified using qPCR. We provide the raw metabarcoding datasets, the amplicon sequence variant tables obtained after bioinformatic processing, the metadatadescribing sampling sites and tissue health conditions, and the code used for bioinformatic analysis. These datasets will enable microbiome comparison within pairs of symptomatic and asymptomatic samples collected at the same time on the same leaf. Such a comparison could help describe the ecological interactions between P. viticola and the grapevine foliar microbiome.< Réduire
Mots clés en anglais
bacteria
fungi
holobiont
metabarcoding
microbial community
microbiota
oomycete
pathobiome
phyllosphere
plant disease
Project ANR
Cultivating the grapevine without pesticides : towards agroecological wine-producing socio-ecosystems - ANR-20-PCPA-0010
Biosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes - ANR-17-CE32-0011
COntinental To coastal Ecosystems: evolution, adaptability and governance
Biosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes - ANR-17-CE32-0011
COntinental To coastal Ecosystems: evolution, adaptability and governance
Origine
Importé de halUnités de recherche