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Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Centre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad] | |
dc.contributor.author | BERNARDO, Pauline | |
hal.structure.identifier | Computational Biology Group, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences | |
dc.contributor.author | MUHIRE, Brejnev | |
hal.structure.identifier | Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI] | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Institut National de la Recherche Agronomique [INRA] | |
hal.structure.identifier | Institut national d’études supérieures agronomiques de Montpellier [Montpellier SupAgro] | |
hal.structure.identifier | Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle [MIVEGEC] | |
hal.structure.identifier | Centre National de la Recherche Scientifique [CNRS] | |
hal.structure.identifier | Institut de Recherche pour le Développement [IRD] | |
dc.contributor.author | FRANÇOIS, Sarah | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
dc.contributor.author | DESHOUX, Maelle | |
hal.structure.identifier | Computational Biology Group, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences | |
dc.contributor.author | HARTNADY, Penelope | |
hal.structure.identifier | School of Biological Sciences and Biomolecular Interaction Centre | |
dc.contributor.author | FARKAS, Kata | |
hal.structure.identifier | School of Biological Sciences and Biomolecular Interaction Centre | |
dc.contributor.author | KRABERGER, Simona | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Centre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad] | |
dc.contributor.author | FILLOUX, Denis | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Centre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad] | |
dc.contributor.author | FERNANDEZ, Emmanuel | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Centre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad] | |
dc.contributor.author | GALZI, Serge | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Centre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad] | |
dc.contributor.author | FERDINAND, Romain | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Centre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad] | |
dc.contributor.author | GRANIER, Martine | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | MARAIS, Armelle | |
hal.structure.identifier | Unidad de Sanidad Vegetal | |
dc.contributor.author | MONGE BLASCO, Pablo | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | CANDRESSE, Thierry | |
hal.structure.identifier | Unidad de Sanidad Vegetal | |
dc.contributor.author | ESCRIU, Fernando | |
hal.structure.identifier | School of Biological Sciences and Biomolecular Interaction Centre | |
hal.structure.identifier | Department of Plant Pathology and Emerging Pathogens Institute | |
hal.structure.identifier | Structural Biology Research Unit, Department of Clinical Laboratory Sciences | |
dc.contributor.author | VARSANI, Arvind | |
hal.structure.identifier | South African National Bioinformatics Institute, MRC Unit for Bioinformatics Capacity Development | |
dc.contributor.author | HARKINS, Gordon W. | |
hal.structure.identifier | Computational Biology Group, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences | |
dc.contributor.author | MARTIN, Darren P. | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
hal.structure.identifier | Centre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad] | |
dc.contributor.author | ROUMAGNAC, Philippe | |
dc.date.issued | 2016 | |
dc.identifier.issn | 0042-6822 | |
dc.description.abstractEn | Little is known about the prevalence, diversity, evolutionary processes, genomic structures and population dynamics of viruses in the divergent geminivirus lineage known as the capulaviruses. We determined and analyzed full genome sequences of 13 Euphorbia caput-medusae latent virus (EcmLV) and 26 Alfalfa leaf curl virus (ALCV) isolates, and partial genome sequences of 23 EcmLV and 37 ALCV isolates. While EcmLV was asymptomatic in uncultivated southern African Euphorbia caput-medusae, severe alfalfa disease symptoms were associated with ALCV in southern France. The prevalence of both viruses exceeded 10% in their respective hosts. Besides using patterns of detectable negative selection to identify ORFs that are probably functionally expressed, we show that ALCV and EcmLV both display evidence of inter-species recombination and biologically functional genomic secondary structures. Finally, we show that whereas the EcmLV populations likely experience restricted geographical dispersion, ALCV is probably freely moving across the French Mediterranean region. | |
dc.language.iso | en | |
dc.publisher | Elsevier | |
dc.subject | maladie des plantes | |
dc.subject | pathologie végétale | |
dc.subject | maladie virale | |
dc.subject | afrique du sud | |
dc.subject.en | geminiviridae | |
dc.subject.en | alfalfa leaf curl virus | |
dc.subject.en | euphorbia caput-medusae latent virus | |
dc.subject.en | prevalence | |
dc.subject.en | recombination | |
dc.subject.en | secondary structure | |
dc.subject.en | genome organization | |
dc.subject.en | France | |
dc.subject.en | Spain | |
dc.subject.en | South Africa | |
dc.title.en | Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1016/j.virol.2016.03.016 | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie | |
bordeaux.journal | Virology | |
bordeaux.page | 142-153 | |
bordeaux.volume | 493 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-01837296 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Non spécifiée | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-01837296v1 | |
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